Phaseolus vulgaris (common bean): 137829715
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Entry
137829715 CDS
T03093
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137829715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvu03021
]
137829715
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137829715
Transcription machinery [BR:
pvu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137829715
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137829715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
137829715
NCBI-ProteinID:
XP_068492700
LinkDB
All DBs
Position
7:complement(4378734..4385389)
Genome browser
AA seq
964 aa
AA seq
DB search
MFSQNLILPPENPRPAASFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELKLVAG
VPVPPPATEEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPA
DQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQPSLHPAMRHLFGTWSKVFP
PSVLRKIEVELQFSLAVNTQSSTLNSARASESPRPSHGIHVNPKYLRQLEHSTVDSVGAE
KLDSSGNANNTNFGIVASKTHQILSGSSRLGIPSSPSRSGLDRPLSGPMDDYAADSSANR
LIERDSPHPSVDYGVGKVLGRDMELSEWQRKQYAGDGRNRFPTSITYSLSNGHQRQSPRA
LIDAYGSDKSQETSSSKPLLVERLERNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHSR
NNSILPSTIGFTRERPVAGNAALSEHDSRKGVWSSGSQLPPVDDSSVAADDAFASLGFRR
APLGQVPGFQNHVSLGSSHHLSNSSQHIFSNRGRARTISFPPIDNIHNADTNPYRVRPAV
SRMVSGRVANVEPRPSVLPATLEIRPSVNLNVSRPPALNPITPLQKHVRSQFEAIHTSNP
IVNHVNKSSFMPEQSFDSVENKDASILKIHQLPNQLPGLISSNQQNHRQAPQLQFFPPSQ
DSSNSQFSHGSSLQGHGASISTAMSNPLPVMQFHLPLQSIANHPLHLRGVARPPLPPGRP
PVPSQMIPHPNACPFMSSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILK
IRYESAINALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSD
RMWLSGAEALGTESVPGFLPTETIEEKRDDEELAVPAEEDQNTCALCGEPFDEFYSDEME
EWMYRGAVYLYAPTGTTAGMDRSQLGPIIHAKCRSESNMAPSEDLGLDEKGADEEGTQRK
RRRS
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgttctcccaaaatctgattctccctcccgaaaaccctagaccagcggcttcgttcgct
tcaaaacccatgagcaatgagatcgcaatcgctgcgcagaaacctcctccgtcgattctc
gttgggcgcttcaaggcactcctcaagcagcgtgatgacgaacttaaacttgtcgcaggg
gtccccgttccgcccccggccaccgaagaaatcgtccagatttacgacctccttttgtcg
gaactcacctgtaatttgaagcctatcatcaccgatctcacaatcatagccgaacagcag
agggagcacgccaaaggcatcgctgacgcaatttgcgctcggattctcgaggtgccagca
gatcaaaagcttccctcactctatttgttggacagtattgtgaagaattttgggcaggaa
tacattaaatacttctctttacgtctgccagaagttttttgtgaggcatacaggcaggtt
cagcctagtttgcatcctgctatgcggcatctttttgggacctggtcaaaagttttccca
ccttctgtcctacgcaagattgaagttgaattgcaattttctctagcagttaacacccaa
tcatccaccctgaattctgcaagggcttctgaatctcctcggcctagtcatggcatacat
gttaatccgaaatacctgcgccagttggagcactcaactgtggatagtgttggtgctgaa
aagttggattcatcaggaaatgccaataatacaaactttggcattgtagctagtaagaca
caccaaattttatcaggcagtagcaggctgggaataccctcttctccctcaagaagtgga
cttgataggcctttgtctggacccatggatgattatgcagctgacagttctgctaacaga
ttaattgagagagactctcctcatccttctgttgattatggagtaggcaaggtattaggt
agagatatggagttgagtgaatggcagcgaaagcagtatgctggtgatggtcgtaatcga
tttccgacttctatcacgtacagccttagtaatggacatcagcgtcaaagtccaagagct
ttaatcgatgcatatggcagtgacaaaagtcaagaaacttctagtagtaagcctttgcta
gttgaacggcttgagagaaatggtatagacaacaaggtattgcctacatcatggcagaat
actgaagaggaggagtttgattgggaagatatgagtccaaccttaacagatcatagtagg
aataacagtatattgccttcaactattggatttaccagggaaaggcctgttgcaggtaat
gcagctttgtcagaacatgattccaggaagggggtttggtctagtggatctcagcttcct
ccagtggatgattcttctgttgcagcagatgatgcatttgcttctttgggttttcggcga
gcaccactgggacaggtacctggattccaaaatcatgtcagtctgggctcttctcatcat
ctgtccaactcgtcacaacatatctttagtaataggggacgagcaagaactatttcattt
cctcctattgataacattcacaatgcagatacaaatccatatcgggttcgacctgcagtg
tcaaggatggtttctggccgtgttgctaatgtagaacctagaccatcagttttgcctgca
actcttgaaataagaccttctgtaaatttgaatgtcagtagaccacctgcattaaatcca
ataactccattgcaaaaacatgttaggagtcagtttgaagctatacatactagtaaccct
attgtgaatcatgtaaataaatcttcatttatgccagagcagtcatttgacagtgttgag
aacaaggatgcaagtattttgaagatacatcagttgcctaatcagcttcctggactaatt
tcgtccaaccagcaaaatcacaggcaagcaccacaactgcagtttttcccaccatctcag
gattcgtcaaactcacaatttagtcatgggagttctttgcagggacatggtgcttctata
agtactgccatgtcgaatccgttacctgttatgcaatttcatttgcctctccaaagtatt
gcaaatcatcctttgcatttacggggtgtagcccgtccacctttgcctccaggtcgccct
cctgttccatctcaaatgatacctcatccaaatgcttgtccatttatgtcaagccaacag
ccaactgttggatatactaatttaattagttctcttatgtctcaaggtgtgatctcattg
gctaaccagctacctgctcaggattctgttggaactgagtttaatccagatattctgaag
attcgttatgagtctgctatcaatgccttgtatggtgatctcccaagacaatgcacaact
tgtggactccgattcagatgccaagaggaacacagtagtcatatggattggcatgtgact
aagaatcggatgtctaaaagccggaagcagaaaccctctcggaagtggtttgtgagtgac
aggatgtggcttagtggtgcagaggcattgggaactgagtcagttccaggttttttgcct
acagaaaccatagaagaaaagagagacgatgaagagttggctgttccagcagaagaggac
cagaatacttgtgcattatgtggagagcctttcgatgagttttacagtgatgaaatggag
gaatggatgtatagaggagctgtatacctctatgctcccacggggacaacagcaggcatg
gacaggtcacagttaggccctataatccatgctaaatgcagatcagaatctaatatggca
ccatctgaagatcttgggctggatgaaaagggtgctgatgaagagggtactcaaaggaag
cgaaggcggagttga
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