Phaseolus vulgaris (common bean): 137830287
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Entry
137830287 CDS
T03093
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137830287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvu03021
]
137830287
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137830287
Transcription machinery [BR:
pvu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137830287
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
137830287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
137830287
NCBI-ProteinID:
XP_068493640
LinkDB
All DBs
Position
7:complement(34647132..34656182)
Genome browser
AA seq
1027 aa
AA seq
DB search
MENSRRPFDRSREPGPKKARLIEELDRAPNSGARQFPQLQVISGVATLPSARFRTNERDL
ESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEK
AIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVH
QSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASATLRSDSQSQRPPHSIHVNPKY
LERQRLQQSSRTKGVVDDMTGAISNSNNDLEMPGRTLGVLRPWVDPNVTVNVSSRENDRA
RRDAFNDSVPEKSTGASYGSNEFGSNISRNLGLGISRPGGRVTESGHDKGWYNKSGVVAG
TMPGQRNGLSLKYSFLNTEAPKSMILDTHHQPAQKITSTQSSVISNSWKNSEEEEYTWDE
MNSGLTGHGTSIVSSLSKDAWTADDDNLEVEDRNQVRNPFVVNANREIAIESQANEKKRF
PASQHHSSISWKLQEQHSIDELDRKAGQLSRFVSTPSSTSASTARMGNRPFLSNASIGLP
GVAGPFHSLGDENPSGQSPLRRRSPSPPVSVHYSHPLQNLAEQDLPQTDKASEFLGGLQS
HYIKDSSTALPLNIQDGNLQRSQLKNLQGPFSSMTFQARHQQQFGTSHNEVTIKTEKPPV
SKVSLARETKSSTSTGNLPTRLGVRPSRTGGPSPATLISSVSTIALPSSLGPSSDNSPAL
SKIPQRKVGQPPRLSTLPPASSNVSSASAQTSDANNTLNPIANLLSSLVAKGLISAEKES
TTKVPSELLTRLEEESDSITTGNSLPVASASGSAAVPVPSIKDDVDDTARTPISLSESTS
PGVVNLIGFEFKLDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQLNRHLEWHATRDR
EDNGLTKASRWYLKSSDWIFGKAECVSENEADSVDTYGNEADRSQEDATVVAADENQCLC
VLCGELFEDFYCEESGGWMFKGAVYFANSDSNSEMGFGDTSTGRGPIIHANCLSDNLISS
VPEMEQD
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggagaactcgcgtagaccgttcgatagatcgcgagagccaggacccaagaaggcccga
ttgattgaagagctggatcgggctccgaattcgggtgcgagacagtttcctcagctacaa
gtgatttctggggttgcaacgttaccgtctgcaaggtttagaacaaacgaaagagacctt
gaaagcaatgattttggtcgccggggtggtgctggaggtggcggttatcagccccagcca
ctgccatttcaggagcttgttactcagtataaggcagctcttgcagaacttactttcaac
tcgaaaccgataattaccaacttgactatcattgcaggggagaaccaagctgcggagaag
gccattgcagcaactgtttgtgctaacattctagaggttcctagtgatcaaaagctgcca
tcactttatctcttagacagtattgttaagaatattgggcgggattatataaaatacttt
gctgccaggctacctgaggtattctgcaaagcatacagacaggttgatccttctgtccat
caaagtatgagacatcttttcggaacttggaaaggagtctttcctcctcagacccttcag
attattgagaaagaattaggcttcacttctgcagtcaatggctcatctgcttctgctaca
ctcaggagtgattcacagtcacaacgcccacctcatagtatccatgttaatcccaagtat
ttagaaaggcaacgtctacagcagtccagcaggactaaaggagttgttgatgatatgact
ggagccatttcaaactcaaataatgacctagagatgcctggtagaaccttaggtgtttta
cgaccatgggtggatcctaatgttactgttaatgtcagttcacgtgaaaatgatcgtgct
cgaagagatgcattcaatgattctgttccggaaaagagcactggtgcatcctatggaagc
aatgaatttggttccaatatttcaaggaatttgggcttgggtatcagccgacctggtggt
agggtgactgagtcaggacatgacaaaggttggtacaacaaatctggtgttgttgcgggg
accatgcctggacaaagaaatggtttgagtctcaagtatagttttttgaatactgaagca
ccaaagtccatgattttggatacacatcatcaaccagcacaaaaaataacaagcacacag
agcagtgtgatctcaaatagctggaaaaattctgaggaagaggagtacacatgggatgag
atgaactctggcttgactggtcatggtacatctattgttagcagcttgagcaaagatgct
tggactgctgatgatgataatttggaagttgaagatcggaaccaagtcagaaatcctttt
gtggtaaatgccaatagagaaatagccattgaatctcaagccaatgaaaagaaacgattt
cctgcatctcagcatcattcatcaatatcatggaaattgcaggagcagcactctattgat
gagttggatcggaaggctggtcagttgagcagatttgtgtccacaccgtctagtacaagt
gcctctactgccaggatggggaatcggcctttcctgtcaaatgcatccataggattgcca
ggagttgcaggaccatttcattctttgggagatgaaaacccttctggacagtcacctttg
cgacggaggtctccatcaccgccagtaagtgtgcactattctcatcctctgcaaaatctg
gcagagcaagaccttccccagactgataaggcatctgaatttctgggaggtctacagagc
cactatattaaagattcttcaactgcccttcctcttaatattcaggatggtaacttacaa
agatcacaactgaaaaatttgcagggtccattctcttcaatgactttccaggcaaggcat
cagcagcaatttggcacttctcacaatgaggttactattaagactgagaagccacctgtg
tcaaaagtttctttagccagagaaactaaaagtagcacgagtacagggaatcttccaact
cgattaggtgttcgaccttcacgaacaggtggtccttcccctgccacattaatttcttca
gtgtccacaattgcattaccatcatcattaggtccttccagtgataattcacctgctctc
tcaaaaatacctcaaagaaaggttggacaaccgcctaggttatctactctaccacctgca
tcctctaatgtcagcagtgcctcagctcagacaagtgatgccaataataccttgaatcca
attgctaatcttttaagctctttagttgcaaaaggcttgatatctgcagaaaaagaatca
acaactaaggtgccctctgagttgctgactcggttggaagaagaaagcgatagcattacc
accggtaactctttgcctgtggcctcagcttctggttctgcagctgttccggtcccttct
atcaaagatgatgttgatgacactgcaagaacacccatatccttgtctgaatcaaccagc
ccaggagttgtaaatctcattggctttgagtttaagcttgatgtgttacgagaattccat
tcatctgtaattagtggtttatttgatgatcttccacatcattgcagcatttgtggcttt
agacttagattccagaaacagttaaatagacacttggagtggcatgccacaagggataga
gaagataatggtttaactaaggcatcgagatggtatcttaagtcaagtgactggattttt
ggcaaggctgaatgtgtatcagagaatgaggctgattctgtagatacatatggcaatgaa
gcagacagaagtcaagaagatgctactgttgtagcagcagatgaaaaccagtgcttgtgt
gtgttgtgcggtgagctatttgaagatttttactgtgaggaaagtggggggtggatgttc
aaaggagctgtttactttgctaactctgatagcaacagtgagatgggatttggagatacg
agtacaggaaggggtcctatcattcatgcaaattgcttatcagataacttgatttctagt
gtccctgagatggagcaggattaa
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