Phaseolus vulgaris (common bean): 137830740
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Entry
137830740 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137830740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137830740
03012 Translation factors [BR:
pvu03012
]
137830740
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137830740
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137830740
Translation factors [BR:
pvu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137830740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
Rad17
AAA_19
NACHT
ATPase
Motif
Other DBs
NCBI-GeneID:
137830740
NCBI-ProteinID:
XP_068494348
LinkDB
All DBs
Position
7:38834601..38846442
Genome browser
AA seq
1031 aa
AA seq
DB search
MPRNLFRPTFNTSHRRLAFLHLPAPKPFPTNLPISSSVMAYRPNYQGGGRRGASSSAGRG
GGRRGGGGGGRGGRGEQRWWDPVWRAERLRQQQAEKEVLVENEWLDKIEKMKRGGEQEMV
IKRNFSIADQKILADIAYQHELYFHAYSKGKILVVSKVPLPDYRADLDEHHGSTQKEIRM
STDIEKKVGNILNSSHSKGAAPSSLPSVSADLGHKQSVITIKTVSSEQTDSLKEKLSVAL
KERQELVQASDSLKEMISFREKLPAFKMKSEFLKAVQENQVLVVSGETGCGKTTQLPQFI
LEEEISCLRGADCNIICTQPRRVSAISVATRISSERGESIGETIGYQIRLESKRSADTRL
LFCTTGVLLQQLVQDPELKGVSHLLVDEIHERGMNEDFLIIILRDLLPRRPDLRLILMSA
TINADLFSKYFANAPTIHIPGFTYPVAEYFLEDVLEKTRYSIKSDSDNYEGNSKRRRKQQ
DSKKDPLTEMFEDIDVDTNYKNYSLGVRKSLEAWSGLQIDLGLVEAAIEYICQNEGSGAI
LVFLTGWDEISKLLDKLKANNLVGDPQKFLILPLHGSMPTVNQCEIFDRPPPNKRKIVLA
TNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGV
CYRLYPKLIHDAMPQYQLAEILRTPLQELCLHIKSLQLGTVGSFLEKALQPPDPLAVKNA
IELLKTIGALDEHEELTPLGRHLCNIPLDPNIGKMLLMGSIFQCLNPALTIAAALAYRNP
FVLPINRKEEADAAKQSFAGDSCSDHIALLKAFEGWKEAKRSGNEKQFCWDNFLSPVTLR
LIDDMRMQFLNLLSDIGFVDKSRGPNAYNQYSHDLEMVCAILCAGLYPNVVQCKRRGKRT
AFYTKEVGKVDIHPASVNAGVHLFPLPYIVYSEKVKTTSIYIRDSTNISDYALLLFGGNL
VPNKSGEGIDMLGGYLHFSASKSVIELIRKLRGELDKLLNRKIEEPGFDVSSEGRGVVAA
AVELLHSQVIR
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaccttttccgccctactttcaacacatcccatcgtcgcctcgctttcctg
cacctgcccgcacccaaacctttccctaccaaccttccgatctcctcctccgttatggcc
taccgccccaattaccaaggcggcggccgcagaggagcctcctcctccgccggtcgagga
ggcggccgccgtggaggtggtggtggtggacgcggtgggcgcggcgagcaaaggtggtgg
gaccctgtttggcgcgccgagcgcctcagacaacaacaagccgagaaggaggtgctagtt
gagaacgagtggttggataagatagagaagatgaaacgaggaggggagcaggagatggtg
attaagcgtaactttagtattgcagatcagaaaatcctagctgatatagcctatcagcat
gaactttacttccatgcttatagtaaggggaagattctcgtcgttagcaaagttccattg
cctgattatcgtgctgatcttgacgagcatcatgggtcaacacagaaggagattagaatg
tcaactgacattgagaagaaagtaggaaatattttgaatagttcacattcaaagggggca
gcaccatctagtttgccttctgtgtcagctgaccttggacataaacaatctgtaatcact
ataaaaactgtttcttcagaacagactgattctttgaaggagaaacttagtgttgcactc
aaggaaaggcaagaacttgtacaggcaagtgatagcttgaaggaaatgatatcatttagg
gagaagcttcctgcatttaaaatgaagtctgagtttctaaaagcagttcaagaaaatcag
gtattagtagtttcaggagagacaggttgtggtaaaacaacacagttgccacaattcatt
ctggaagaagaaatatcgtgtttgcgtggagctgattgcaacataatttgcactcagcct
cgtcgagtatctgctatttctgttgcaactcgaatatcttctgagagaggtgagagtatt
ggagaaacaattggatatcaaatccgtcttgaatcaaaacgttctgcagatacacgcctg
cttttctgcaccactggtgttttacttcagcagttggtacaagacccagaattgaaaggt
gttagtcatttgctggtggatgaaattcatgaaagaggcatgaatgaagactttctaatt
ataattttacgtgaccttcttccacgacgtccagatttgcgtctcattttgatgagtgcc
actattaatgctgatttgttctctaaatactttgcaaatgccccaactatacacataccg
ggatttacttatcctgtggcagagtacttcttagaagatgtgttggagaaaactcgatac
agcatcaagtcagattctgacaattatgaggggaattcaaagaggagaaggaaacaacag
gattcaaagaaggatcccttgactgaaatgtttgaggatatagatgtagatactaattac
aaaaattacagcttgggtgttagaaaatctcttgaagcttggtcaggtttgcagattgat
ttgggtttggtagaggctgcaattgaatatatatgtcagaatgaaggtagtggagcaatt
cttgtatttctcactggctgggatgaaatctctaagctacttgacaaacttaaagcaaat
aacttagttggagaccctcagaagtttttgatccttcctttacatggatcaatgcctact
gtcaaccaatgtgaaatatttgatcgtcctcccccaaacaagagaaaaattgttctagca
acaaatattgctgagagtagtatcaccatagatgatgtagtgtatgtcatagactgtggc
aaagcaaaggagaccagctatgatgctctaaataagctagcatgcttgttgccatcatgg
atttcaaaggcgtcagctcatcagagacgtggtcgtgctggtcgagtgcaacctggggtt
tgttataggttgtatccgaaactgatccatgatgcaatgcctcaataccagttagctgaa
atcctccgaacacctttgcaagagttgtgccttcatattaaaagtttgcagcttggaact
gtgggatcatttttagaaaaggcacttcaaccaccagatcctttagctgttaagaatgct
attgaacttcttaaaacaattggggcactagatgaacacgaggagctcactccactgggt
cgccatctttgtaacatacctttggacccaaatataggaaagatgcttctcatgggctct
atctttcagtgcctcaatcctgccttaactattgctgctgctcttgcttaccgcaacccg
tttgtcttacccataaacagaaaagaggaagctgatgcggcaaagcaatcttttgctggt
gattcttgcagtgatcacatagcccttcttaaagcttttgaaggatggaaggaggcaaag
cgaagtgggaatgaaaaacagttttgttgggataatttcctatcccctgtaaccttgcgg
ttgattgatgatatgaggatgcagtttcttaatttattatctgatattggatttgttgac
aagtccaggggtcctaatgcttacaaccagtacagtcatgatttggagatggtttgtgca
attctttgtgcggggctctaccctaatgttgtgcagtgcaaaagaagaggaaaaaggaca
gcattctacactaaagaagtagggaaggttgacatccatcctgcttctgttaatgctggg
gttcatctctttcctctgccctacattgtgtatagtgaaaaggtgaaaacgaccagcatc
tatattagagactctacaaatatttcagactatgccctacttctatttggtggtaatcta
gttcctaacaaaagtggtgagggcattgacatgcttggaggttaccttcatttttctgct
tcaaaaagtgttattgagttaataaggaaattacgtggggagcttgacaagcttctgaac
agaaaaatcgaagaacctggatttgacgtttcttcagaaggaaggggtgtggttgccgct
gctgtggagttactgcacagtcaagtcattagataa
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