Phaseolus vulgaris (common bean): 137831011
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Entry
137831011 CDS
T03093
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137831011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137831011
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
137831011
mRNA cycle factors
Common to processing body (P body) and stress granule
137831011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
137831011
NCBI-ProteinID:
XP_068494594
LinkDB
All DBs
Position
6:complement(6559549..6566166)
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AA seq
975 aa
AA seq
DB search
MMLIEMDKMSAPSSRERAQRLYEKNLELENKRRRSAQARVPSDPNAWQQMRENYEAIILE
DHAFSEQHNIEYALWQLHYKRIEEFRAYFSAASLSSTSANPSQGVKGPARPDRITKIRLQ
FKTFLSEATGFYHDLITKIRAKYGLPLGYFEDSENRIVMEKDGKKSAEMKKGLVACHRCL
IYLGDLARYKGMYGEGDSKNREYTAASSYYLQAASLWPSSGNPHHQLALLASYSGDMLVT
IYRYFRSLAVDSPFTTARENLIVAFDKNRQSFSQLSGDAKAYAVKESSARVTGKGRGKGE
AKLATRGTSVDASPKTGASTIQETYIYFCTRFIRLNGILFTRTSLETFAEVLAAVITDLR
ELLSSGQDEELNFGTDATENALVIVRIVCILVFTVYNVNKESEGQTYAEIVQRAVLLQNA
FAAAFELMGYIIERCAQLRDPSSSYLLPGILVFVEWLACYPDLAAGNDVDESQANLRSEF
WNRCVFFLNMLLSIGPMSIDDEEETCFNNMSRYEEGETENRHALWEDFELRGFVPLLPAQ
TILDFSRKHSIGSDGDKERKARVKRILAAGKALANVVKVDKKVIYFDSKAKKFVIGVEPQ
TADDFVLPTYSDIQNAKELVQEKPADKSELEIVQSNQHQQMEGDEDDEVIVFKPIVSETR
ADVVASSWTPNLGLEPVLKASGGDLKFHVNSTPSPLMNLGHQTLSVPGSGMVPQHMQPLQ
LHTSRWLEEEISIANNLKGLGIFENGHAMKPGVQEAIGFSNHVSFPIPNQQSIGAADTNG
MFYGVSKALDSVVPSKVDAIASSGVFTDNLAVKASALPVGSRKAPVSRPTRHLGPPPGFS
HLPPKQGVESTVSDSISGNPMMDDYSWLDGYHFRSSTKGLGSNGPLNYSQSNSPLVSSNG
FSPNVSFPFPGKQVHSLPLHAEKQNGWQDFQNYDLLKSHHDQQLQPQQLSAGNQQFSPLP
EQFQGQSIWTGRYFV
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgatgttaatagaaatggataaaatgtctgctccttcatcgagggagcgtgcccaacgc
ctctatgaaaagaaccttgaattggagaataagcgtcggaggtcagctcaggcgcgggtt
ccatcggatccaaatgcttggcaacagatgcgtgagaattatgaagcaataattcttgag
gatcatgctttctctgagcagcacaatattgaatatgcactctggcagttgcattataag
cggattgaggagtttagagcatacttcagtgctgcttctctttcttctacaagtgcaaac
ccatctcagggagtgaaaggccctgcacgacctgaccggataactaaaataaggctacaa
tttaagacttttctttcagaagcaactggattttaccatgaccttattacgaagatcaga
gctaagtatggtcttcctcttggttactttgaggattcagagaatcggattgtgatggag
aaagatggaaaaaaatctgctgagatgaagaaaggtttagtagcttgtcatcgttgtctg
atatacttgggtgatcttgctcgttataaaggtatgtatggtgaaggtgattcaaaaaac
cgggagtatacagcagcttctagttactacttgcaagctgcatccctgtggccttctagt
ggaaacccccatcaccagcttgctttgttggcttcatactctggggatatgttggtgact
atttataggtattttcgtagtctggctgtagatagtccattcacgactgcaagagaaaac
ttgatagttgcatttgataagaatcgtcaaagtttctctcagctatctggtgatgctaaa
gcttatgcagtcaaggaatcttctgcacgagtaacgggtaaaggaagaggaaaaggggaa
gcaaaacttgcaacaaggggtactagtgttgatgccagtcctaaaacaggagcatccact
atacaggaaacttatatatacttctgcactcgctttatccgtctaaatggaatcttgttt
acacgcactagccttgagacttttgctgaagttcttgctgctgtaatcactgacctgcgt
gagcttttgtcttctggacaagatgaagagctgaattttgggacagatgctaccgagaat
gcacttgtcattgttagaattgtttgcattctagtatttacagtttataatgtgaacaag
gaatctgaaggtcaaacttatgcagaaattgtacagcgtgctgttttgcttcagaatgca
tttgctgctgcttttgaattgatgggttacataatagagagatgtgcacagctgcgtgat
ccttcttctagttatcttttaccaggcattttggtttttgttgagtggttagcttgttat
ccagatcttgctgcaggcaatgatgtggatgaaagtcaggcaaatttgagatctgaattt
tggaaccgttgtgtattcttcttgaatatgctgctttccattgggcctatgtctattgat
gatgaagaggagacttgctttaataacatgagcaggtatgaggaaggggaaactgaaaac
cgacatgctttgtgggaggactttgagttaaggggatttgttccacttcttcctgcacaa
accatcttggatttttcaaggaagcattccattggaagtgatggtgacaaggaaagaaaa
gctcgagtcaaaaggattttagctgcggggaaggctttagcgaatgttgttaaggttgat
aagaaagtgatatattttgattcaaaggccaagaaatttgtaattggtgttgagcctcaa
actgcagatgattttgttcttcctacctattcagacattcagaatgcaaaagagttagta
caagaaaaacctgctgacaaatcagagttggaaattgttcagtcaaaccagcaccagcaa
atggaaggtgatgaagatgatgaggttattgtttttaagcctatagtatctgagacacga
gctgatgtggttgcctcatcatggacacccaatctgggattggaacctgttctaaaagca
tctggaggggatttaaaatttcatgttaattctactcctagtcctctaatgaatctaggt
catcagactttatccgttcctggtagtggtatggtgcctcaacacatgcaaccacttcag
ctacatacatctaggtggttagaggaggaaatttctatcgctaacaatttgaaaggtctt
gggatatttgagaatgggcatgcaatgaaacctggtgtacaagaagctattggcttctcc
aaccatgtttcatttcctattcctaaccaacaatctataggtgctgctgataccaatggc
atgttttatggtgtctcaaaagctttggactctgtagtaccatcaaaagttgatgctatt
gcatcttctggagtatttactgataacttagctgtaaaagcatcagctttgccagttggt
tctagaaaagccccagtcagtcgaccaactaggcaccttggacctcctcctggtttcagt
caccttcctcccaagcaaggtgttgaatccactgtttcagattcaattagtgggaatcca
atgatggatgattacagttggttggatggatatcattttcgatcatcaaccaaaggatta
ggctccaatggtcctctcaactactctcagtcaaattctccgctagtcagtagtaatggc
ttcagtcccaatgtcagctttccttttcctggaaaacaagttcattctctgcctcttcat
gcagagaagcagaatggttggcaagattttcaaaattatgatcttttaaaatcacatcat
gatcagcagctgcagccacagcagctctcagctggaaatcagcagttttctcctctgcct
gagcaatttcaaggacagtctatctggacaggtcgttactttgtgtga
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