Phaseolus vulgaris (common bean): 137831076
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Entry
137831076 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137831076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137831076
03012 Translation factors [BR:
pvu03012
]
137831076
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137831076
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
137831076
Translation factors [BR:
pvu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
137831076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_3
HA2_C
OB_NTP_bind
DEAD
Helicase_C
R3H
Ank_2
nSTAND3
ATPase
HA2_N
Ank_5
AAA_22
NPHP3_N
AAA_19
ABC_tran
AAA_7
DUF6638
AAA_25
Rad17
Motif
Other DBs
NCBI-GeneID:
137831076
NCBI-ProteinID:
XP_068494692
LinkDB
All DBs
Position
6:complement(10520599..10540640)
Genome browser
AA seq
1483 aa
AA seq
DB search
MANTEEAEPSNQLATPNPFIDVRSKVLLQKYLKILKVFITSNDQVYMFHGDFSGEERQLL
EELCHHMKLGVRFFGIEGERKIIVFKLKSKSSKNSFLSRKRKSIETPEENAEICELKKIW
ISQTLHKFSASNDEVYNFEDKLSTNDRALVEQLSLKMGLTCNFSGCGIRKKTSIHKIKEA
PRHQNPIIDELTTIQISQTSEKSSASKVHQLSQEMGFQVENSGSEKNIHTTPKLENLPSF
TFSGQSKRVLANLFKQYPPDDEELWGVRIEASGDTTDGTEEKKDDVFSRPQMSKVEITKR
LEILSNGMRDSFKLKLIKEKRSKLPIASFKDIITSTVESHQVVIICGETGCGKTTQVPQY
ILDHMWVKGEVCKIVCTQLQSMSAISVSKRISSERGEVIGNDVGYKVPFGSQGGRHSSIV
LCTPGDLLKALASTGSHYSKRQHMKGDISSMTHIIMDDIDERDSSSDLMLAILREILPSN
PHLHLILMSASFDAARFSQYFGVCPIIYVPGLTYPVKNYYLEDVLSIVNSGADNQELSPV
EKLSLDEAIHLAWSNDEWCSLLELVSCKTSPKVFDYQHSLTGLNPLMVFAGKGKVGDMCM
LLSLGANCHLKATDGTTALEIAEKENQLVAVELLKKHMNYDFGDKEEKNILDKYLATANL
KDVDVVLIEQVIRKICVDSKDGSIIVFLPGWDEIIRTRERLLASSFFNKRSKFKVVSLHS
LVTSSEIDEAFLPAPHGCRKIVLSTNISETAVALDDIVYVIDTGLVKEKSYDPCKNLFTL
QSSWISKASAKKREGCASRCHPGACYHLYSKVQSDFFLDFQCPEIKRMPIEELCLQVKLF
DPSCKIEQFLSQTLDPPGFESIQIAVGVLQEIGALSVDEQLNPLGQKFGYLPVHPYTSRM
LIFSILMNCLDPALTLACASKFKDLFVLPILPDEKKRAAAARSELASLYGGCGDQFAIIA
AFQCWINSKKMGLESRFCSQYFVSQRAMCKLDVMRKNLAAELYRNGLINRSVTDYCSNAY
DPGILQAVLVAGMYPMVGKLFFSSKSGNKIFVNTRSIDNVFLNSDTVIYNLSSQNSLDCS
FVVYDEITSIDWGMCIGNCTAVGILPLFLLSKEIDVDQAKDCTDNIITVIIDRWLYFQST
AFDAFHMNYLRELLRAAIIDKVTYSTDVLSPVLQAAVDSLACILSCHGRSCIPLVSDFQT
ELINQDAHQTNPSEPGAIKHPIIPTSKRLACPSHNDVPSGTSISTKFGAENPSDPASKNT
ETGLNNDVNLTDVTASREPNQAVSLNASKGGCYEKILIGWTFPEEGWIKANVDGSYRDHL
HLTSCGGVFRDHTGSWCFGFTLNLGSFCFGASDPTSSNQFIVLSELWGILTALKLGREKN
ISQLWIESDCYHAVWCILNKRIEKSDPCSPLVQSILELMEGNWTVRISHCCREGNQVADW
LSKFGHSTGVGLQVLDAPPSRLVQYLAYDYCGVYKQRRVRVSD
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaccgaggaggctgaaccatcgaaccaacttgccactcccaatcccttcatc
gacgtacgctccaaagttctcctgcaaaagtatttgaaaattctgaaagtatttataacc
tccaacgatcaagtttacatgtttcatggtgacttttcgggtgaagagcgccagttactg
gaggagttatgccaccacatgaagttaggtgtaagattctttgggattgaaggtgagagg
aaaataattgttttcaaactgaaaagcaaatcctcaaaaaattctttcctgtcaaggaaa
aggaagagcatagagacgccagaggagaatgcagaaatttgtgaattgaaaaaaatctgg
atttcccaaacattacacaaattttcagcttcaaatgatgaagtgtacaattttgaagat
aaactgtctactaatgatcgtgctcttgtggagcagctatccctaaaaatggggcttaca
tgtaacttttctgggtgtgggattagaaagaaaacatctattcacaaaataaaagaggca
ccacgacaccaaaatcccattattgatgaattgacaacgattcagatttcccagacatca
gaaaaatcttcagcgtcaaaagtgcatcaattatcccaggaaatggggtttcaagttgaa
aattcagggagtgaaaagaatattcacaccactcctaagttagagaatcttccttctttc
acattttctggacaatcaaagcgtgtattagcaaatttatttaagcaatatcctcctgat
gatgaggaactttggggagtgaggattgaagcatctggtgatactactgatggaacagaa
gaaaagaaagatgatgttttcagcaggcctcagatgagcaaagttgaaattaccaagaga
ttggagattctttctaatggaatgagggattcctttaaattgaaactgatcaaagaaaag
agatctaagcttccaatcgcatccttcaaagacatcattacatcaacggttgaatctcac
caggtagttatcatatgtggtgagactggttgtggaaagactactcaggttccgcaatat
attttggatcacatgtgggttaagggtgaggtctgcaaaatagtttgtactcaactacaa
tctatgtcggctatttcagtttccaagagaatatccagcgaaagaggagaggttattgga
aacgatgttggatacaaggtgccgtttggaagccaaggtggaaggcactcatcaattgtg
ctgtgtactcctggagatctattgaaggctttggcttctactggttcccattattcgaag
agacagcatatgaagggtgacatttctagtatgactcacataattatggatgacattgac
gaaagggacagttcctcagacctcatgttggcaattctcagagagattctgccttcaaat
ccccacctacatctgatactaatgagtgctagttttgatgctgcaagattttctcaatat
tttggtgtctgcccaatcatctatgttccagggctgacgtatccagtaaaaaattactac
ctggaggatgtactttctattgtaaattcaggtgcagataaccaggagcttagtcctgta
gagaagctgtctctagatgaagcaatacatttggcttggtctaatgatgagtggtgctca
ctattagagcttgtttcttgtaaaaccagcccaaaggtctttgattatcagcattcatta
actggcctcaatccattaatggtgtttgctggaaagggtaaagtgggtgatatgtgcatg
ctcttatcattaggggcgaactgccatttaaaggccacagatggaacaactgcattggag
atagctgagaaggaaaaccagctagtagctgttgaattgctgaagaagcacatgaattat
gattttggtgacaaagaagagaaaaatatactagataaatatcttgcaacagccaacctt
aaagatgttgacgttgttctgatagaacaagttataagaaaaatatgtgttgattcaaaa
gatggaagcatcattgttttccttccaggctgggatgagataattagaacacgtgaaaga
ttgcttgcttcctcttttttcaataaaagatcaaagtttaaggtagtctctctgcattca
ttggttacatcctctgagatagacgaggcttttttgcctgcaccccatggttgtcgcaaa
attgttctctctaccaatatttctgaaactgctgtcgctctggatgatatagtgtatgtt
atagacactgggcttgtgaaagaaaaaagttatgatccttgcaaaaatttgttcactctc
caatcatcttggatttcaaaagcaagtgctaagaaaagagagggatgtgccagtcgctgt
catcctggagcttgttatcatctgtattcaaaagttcaatctgatttcttcttagatttt
cagtgtcctgaaattaaaagaatgcctattgaggagctctgtttgcaggtgaagttgttt
gatccaagctgcaaaatagaacagtttctgagtcagacattagatcctccgggttttgag
tctatacaaattgctgttggcgttcttcaggagattggggctttgtcagttgatgaacaa
ctgaacccgttagggcagaagtttggctatcttcctgttcatccatatacgagcaggatg
cttattttttccatattaatgaattgcctcgatccagctttaacacttgcatgtgcatct
aagtttaaagatctatttgtgcttcctattttacctgatgaaaagaagagagctgcagct
gccagatctgagcttgcttcgttgtatgggggttgtggtgaccagtttgctataatagca
gcatttcaatgctggattaattcaaagaaaatgggtctagaatcacggttttgttctcag
tactttgtttctcaaagagctatgtgcaagttagatgtcatgcggaagaatttagccgca
gaactatataggaatggacttattaacaggagtgttacagattattgctctaatgcctat
gatcctggtatacttcaagctgttttggtagcagggatgtacccaatggttggcaaattg
tttttttcttccaaaagtggaaacaagatttttgttaacactagaagtattgataatgtt
ttcttgaatagtgatactgtgatttataacttgtcatcacaaaatagtcttgattgctct
tttgttgtatatgatgagattacaagcatcgactggggcatgtgtatagggaattgtact
gctgttggaatacttccattatttttgctttccaaagagattgatgttgatcaagcgaag
gattgtactgataatataatcacagtaatcatagatcgatggctttattttcagtcaaca
gcattcgacgcttttcacatgaactacttgagagagctattaagagcagcaattatagac
aaagtgacatattcaacagatgttctttctcctgttctacaagccgctgtggattcctta
gcttgcattctgtcttgtcatgggcgctcttgcataccactagtctcagatttccaaaca
gagcttataaatcaagatgcacaccagaccaatccatctgaacctggggccattaaacat
ccaattatcccgacaagtaaaaggttggcttgcccgagtcacaatgatgtgccttctgga
actagcatatccacaaaatttggtgcagaaaaccctagtgatcccgcaagtaagaacact
gaaacaggtttaaataatgacgtaaacttgactgatgtgacagcttctagagaaccaaat
caagcagtgagtttgaatgcttcaaaagggggttgctatgaaaagattttgattgggtgg
acctttcctgaggagggatggattaaagctaatgtagatgggtcttatagggatcatcta
catcttactagctgtggaggagttttccgtgatcacactggttcttggtgttttggcttc
acgttaaatcttggatcattctgtttcggagcatcagatccaacgtctagtaatcagttt
attgtgctatctgaactgtggggtatcctcactgccctcaaacttggtagggagaaaaac
atttcgcagctgtggattgagtctgattgctatcatgcagtgtggtgtattttgaataaa
cggatagagaaaagtgatccttgcagtcctcttgttcagtccattcttgagttgatggag
ggaaattggacggttcgaatctctcactgttgtcgtgaaggaaaccaagtggctgactgg
ttgtcaaaatttgggcattctactggggtaggtctccaagtgctcgatgcccctcccagt
cgtcttgtacaatatttagcttacgactattgtggagtttataaacaacgaagagtacgt
gttagtgattaa
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integrated database retrieval system
