Phaseolus vulgaris (common bean): 137831395
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Entry
137831395 CDS
T03093
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137831395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137831395
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137831395
mRNA degradation factors
5'-3' decay
Decapping complex
137831395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_EDC4L
PEP5_VPS11_N
Beta-prop_TEP1_C
Beta-prop_WDR75_2nd
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
137831395
NCBI-ProteinID:
XP_068495161
LinkDB
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Position
6:16891547..16900408
Genome browser
AA seq
1329 aa
AA seq
DB search
MMASPNNHHPNTNTNTHPSPPPFDMHSFFNPPPPSSNPNPNPSPSSSYPPPFPAAAPFHF
PAFDLPLHPHHRSLSFPTQPIPPPSNPNAGARLMALLSNPSPPPPDYAPPSSTPSAVLAA
ATAAAAALTRLPSGKVPKGRHLSGERVAYDVDVRLPGEVQPQLEVAPITKYGSDPNPVLG
RQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGR
VYVWKISEGPDDEDKLQITANIVIAIQIVGEEKVEHPQICWHCHKQEILIVGMGKHVLRI
DTTKVGNGETFVAEDPPLRCPVDKLIDGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGT
IKIWEDRKTQPLEVLRPHDGHPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASEEG
WLLPSDTESWKCTQTLELKSSAQQSRDAFFNQVAALSHAGLLLLANAQRNAIYAVHLEYG
PNPESTRMDYIAEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTQAIQQYALDLAQCLPP
PLDNVGPEKSDSCVSGDAVTVEGFHNLDSSAPKIMLQAGSTESGLVARYPLSSGHVEAPI
TCSNTEAKPVTLAPSSSDPDIVCIPSPPLPLSPRLSRKLSDIRSPQSNLSDHVGEHPVND
YSIDRQMDTIHRNLSETFSSDSKNDEKKVKQDHISSVLSPSVMFKQPTHLITPSEITKAG
SSSSENNIVDRKSEGEAKIQDVGSAEVEVKVVGETRSNQIDEFGRQGSQQNPISDSKEKI
FCSQASDLGIEMAREGCVIATGDTFLTEEPGQIDSMGAMSPAQPPDTGEDGLQDMAKDAH
EKVSDSSTSVAVPPSPVPNAKGKRQKGKNSQASGLPSSSPSVFNSTDSSNEPNGNSSLPS
AENAQILAMQESINQLLTMQKEMQKQMTMMVAVPVTKEGRRLEAALGRNMEKAVKANSDA
LWARIQEENAKNEKLLRDRIQQITGLISNFMNKDLPAILEKTVKKEMASVGQAVVRAMSP
AVEKIISSAIVESFQRGVGDKAVNQLDKSVSSKLEATVARQIQAQFQTTGKQVLQEALKS
SFETSAVPAFEMSCKAMFEQVDATFQKGMAEHSAAVQQRLESAPTSLAMTLRDSINSASS
ISQTLSREVLEGQRKLVALAATRTSSGSLNPLPVQLNNGPLLHEKVEVPLDPTQELARLI
SERKYEEAFIGALHRSDVSIVSWLCSQVDLHGLLSIVPLPLSQGVLLSLLQQLACDINND
TARKIAWLTDVASAINPSDPLIAMHTRPIFEQVYQILNHQRNLPTMTGTDLSSIRLLLHV
VNSMLMTCK
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttccccaaacaaccaccacccaaacaccaacaccaacacccacccttctcct
cctcccttcgacatgcactccttcttcaaccctccgcccccttcgtcaaaccctaaccct
aaccctagcccttcatcctcataccctccgcccttccccgccgccgcgccctttcacttc
ccggccttcgacctccctctccacccccaccaccgctccctctccttccccacccagccc
atccctccgccctccaaccccaacgccggagcccgcctcatggccctccttagcaacccc
tcccccccgccccccgactacgcgcctccctcctccaccccctctgctgtcctcgccgct
gccactgccgccgcagccgccctcacgcgactccccagcggcaaggtccccaagggaagg
cacctctccggggagcgcgtcgcctacgacgtcgacgtccggctgcctggcgaggtccag
ccgcagcttgaggttgctccgatcacgaaatacgggtcggaccctaacccggttttgggg
aggcagattgcggtgaataagtcctatatatgctatgggctgaaacaggggaacattagg
gtgcttaatatccacactgctgtcaggtctctcctcagaggccacactcagagggtcaca
gacttggcgttttttgctgaagatgttcatctcttggctagtgttggcacagatggtcga
gtttacgtgtggaagatctctgaaggtccagatgatgaagataagcttcaaattacagcc
aatattgttattgctattcaaatagtgggggaggagaaagttgaacatcctcaaatttgc
tggcactgtcataaacaagagattttgatagttggtatgggaaaacatgttttgagaatt
gacaccacaaaagttggaaatggtgaaacgtttgtggcggaggatcctcctctgagatgt
cctgttgacaagctcattgatggggttcagctggtaggcacgcatgatggagaggtgact
gatttatctatgtgccaatggatgaccaatcgattggtatctgcgtcgcaggatggcacg
ataaagatctgggaagatcgcaagacacaaccacttgaagttttgagaccacatgatgga
catccagttttttctgctacatttttcactgctcctcaccagcctgatcatattgtcctt
atcacagcaggaccacaaaatcgggaggtgaagctttgggtatcggcaagtgaagaaggt
tggctgctcccaagtgacactgaatcatggaaatgcactcagacgttggagttgaagagt
tcagctcaacaatctagagatgcattctttaatcaagttgcagcattgtctcatgcaggt
cttcttttacttgcaaatgcccagaggaatgctatatatgctgtacatttagaatatggt
cctaatccagaatcaacacgcatggattatatagctgagtttactgtgaccatgcccatt
ctgagttttactgggacaagtgatatactacctcatggtgaacatattgttcaggtttac
tgtgtccagacacaggctattcagcagtatgctttggatttagcccagtgcttgcctcca
ccattggataatgtgggaccagagaagtcagattcctgtgtttctggggatgcagttact
gttgaaggattccacaatttagactcttctgctcccaaaataatgttacaagcaggtagt
actgaaagtggactcgtggccagataccctttaagctctggccatgttgaggcacctatt
acatgttcaaacactgaagctaaacctgttacattagctccttctagtagtgatcctgat
attgtttgtattccatctccacctcttcctttaagcccaaggttatctaggaaactctct
gatatcaggagtccacagtcaaatttgagtgatcatgttggggaacatcctgttaatgat
tattccatagatagacaaatggataccattcacagaaacctctctgagacatttagtagt
gattcaaagaatgatgagaagaaagtgaaacaggatcacatttctagtgtacttagtcct
tctgtcatgtttaagcagccaacccatctaatcaccccatctgagatcacaaaggctggt
tcctcctcctccgagaataatatagttgataggaagagtgagggagaagcaaagatccag
gatgtgggtagtgctgaagtggaagtgaaggtggtgggtgagacaagatctaatcaaatt
gatgaatttggtcggcaagggtcacaacaaaatccaatttcagatagtaaagaaaaaata
ttttgctctcaggcttcagatcttggtattgagatggctcgagaaggctgtgtgatagct
actggggacacattccttacagaggaacctggacaaattgattcaatgggagcaatgtca
ccagctcaacctcctgatactggtgaggatggactccaagatatggcaaaagatgcccat
gaaaaggtttctgactcatctacatctgtggctgtgccaccatctcctgtgcctaatgca
aaagggaaaagacagaagggtaaaaattctcaagcatcaggcctaccttcctcatctcca
agtgtgtttaattcaactgattcatccaatgaaccaaatggaaattctagccttccgtct
gctgaaaatgctcaaattctggcaatgcaggaatcaatcaatcagttactgacaatgcaa
aaagagatgcaaaaacaaatgacaatgatggttgctgttccagtgacaaaagaaggtaga
aggcttgaggctgccctagggagaaacatggaaaaagctgtcaaggccaacagtgatgct
ttatgggctagaatccaggaggagaatgcaaaaaatgaaaagttgttacgagaccgtatc
cagcaaattacaggtctgattagtaactttatgaataaagatctaccagcaatactggag
aaaactgtaaagaaggaaatggcctcggttgggcaagcagtagtacgtgcaatgtctcct
gctgtggagaaaataatatcttctgctattgttgaatccttccagagaggagtgggtgat
aaggcagtgaaccaacttgataaatcagttagttcaaaactggaagctaccgtagctagg
caaatccaggcacaatttcagacaactggcaaacaggtgcttcaggaggcactcaaatcc
agttttgaaacatcagctgttcctgcatttgaaatgtcgtgtaaagccatgtttgagcaa
gtggatgctacatttcagaaaggcatggctgaacattcagctgctgtgcagcaacgcctt
gaatctgcacccacttctttggcaatgacgctaagggattccattaattcagcatcatca
atttctcaaactttgagtagagaagtgcttgagggccagagaaagctagtagcactcgca
gctacaagaacaagctcaggctcattaaatcctttgccggtccagctcaacaatggtcct
ttacttcatgaaaaggttgaggttcccctggatcccacacaggagctagcaaggttgatt
tctgaacggaaatacgaggaggctttcattggagctctacatagaagtgatgtatccatt
gtatcatggttatgttctcaggttgatttacatggactcttgtcaatagttcctcttcct
ttaagtcaaggtgtactgctctcacttctgcagcaactggcctgtgacattaacaacgat
acagcaagaaagatcgcatggttaacagatgtggcatctgccataaacccatcggaccca
ttgattgcaatgcacacacggcccatctttgagcaagtataccagatactcaatcatcaa
cgtaacttgcctacaatgactggaactgatctctctagtatccgtctgttattgcatgtc
gtcaactccatgctcatgacatgtaaatga
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