Phaseolus vulgaris (common bean): 137831433
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Entry
137831433 CDS
T03093
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137831433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137831433
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137831433
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137831433
mRNA degradation factors
3'-5' decay
Ski complex
137831433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
ATF7IP_BD
Motif
Other DBs
NCBI-GeneID:
137831433
NCBI-ProteinID:
XP_068495205
LinkDB
All DBs
Position
6:complement(17385614..17406667)
Genome browser
AA seq
1333 aa
AA seq
DB search
MDPIYAANELAFRVGFSGHSGHLRLEPLTTPERHNPLRSIPDFISPPAFPSETPESIKKY
IEETYLQPRLDPDEFSPEKVGRQWEFDWFDRAEVPLEPSLPRTMVIPVWEPPFRRSNNGS
VKGIWEPKFEEVDVSDLKLGADESGPLARTSGKDFVRGSINSRPFRPGGLDDSRSIERIL
PEGASNGEWVREIFNGGHAQTIPPSLKEGLDFGELKSYPCSWNVCKEANSLQSSSVEKLG
ELSVQFDDLFKKAWEEDADGEQEQDEVEAVTLEAEVGTTEVSSKLHDSEISLDDILSVDS
EGLKLHLDGFSDEIELQKKEAWALHESSDRIVDCFHELVPDMALEFPFELDAFQKEAIYY
LEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL
LTGDVSMRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVDRGVVWEEVII
MLPRHINIVLLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFHSGELYKICE
SETFLPQGLKAAKEASRKRNLTAGGASGPKVGHDNARGPKRENTSRMKQHGANVSGTGRG
YQNNSNGQSYWEMRRADASMWLMLVNKLSKKSLLPVVIFCFSKNRCDKSADSFTGTDFTS
SSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCR
GVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLSGEYTQMAGRAGRRGLDKIG
TVIVICRDELPEESDLKRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEF
HAQKKLPEMQQLLKRKLDQPRKAIECIKGEPTIEEYYDLYSEAETYNNQISEAILQSPSA
QQFLNTGRVVIVKSESAQDHLLGVVVKTPSPNNKTYIVFVIKPDMPSIMQSASSGTKQNK
SGAFDQGYFVMPKSRRGLVDEYSTSVSARKGKGLINIMFPHCGSASGMGYEVREVDSKEF
LCICSSKIKIDQVGLLEDVNSSVYSKTVQLLVDLKSDGNKYPPALDPVKDLKLRDVKLVA
TYQKWTRLLEKMSQNQCHGCIKLEEHLKLAKEIKKHEEEVYALQFQMSDEALKQMPDFQG
RIDVLKKIECIDEDLVVQMKGRVACEMNSGEELICTECLFENQMDELEPEEAVAIMSAFV
FQQKNTSEPSLTPKLAEARHRLYKTAIRLGELQAQFNLPINPADYAQENLKFGLVEVVYE
WAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEIASNAIKR
DIVFAASLYITGL
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggatccaatctatgcagccaacgagctcgctttccgggtgggattctccggccacagc
ggtcacctcagactggagccgctcaccacgccggagcgccacaacccgctccgttctatt
cccgatttcatttcgccacctgcctttcctagtgagacacctgaatctataaagaagtac
atagaagagacgtatctccagccaagattggatcctgatgaattttcgccagaaaaagtt
gggagacagtgggaatttgactggtttgacagggctgaagttcctctcgagccatcactg
ccacgaactatggtcattccagtttgggaaccaccatttcgacgttcaaacaatggatcc
gttaaaggaatctgggaaccaaaatttgaggaggtggatgtatcagatctgaagttggga
gctgacgaatctgggccattggcacgcacttctggaaaggactttgttaggggaagcatt
aatagtcgtcctttccgtccaggaggtttggatgattccagaagcatagaaagaattctt
ccagaaggtgcttcaaatggtgagtgggtgcgtgaaattttcaatggtggtcatgctcag
acaattcctccaagcttaaaggaaggattggactttggcgagctcaagtcatatccgtgc
tcatggaatgtctgcaaggaagccaattctctccagagttcatctgttgaaaaattgggt
gaattgtccgtacagtttgatgacttgtttaagaaggcttgggaagaggatgctgatgga
gaacaagagcaagatgaagtggaggctgttacattggaagctgaagttggtacaactgag
gtatcaagtaaactgcatgatagtgaaatatcacttgatgatattttgtcagttgattca
gaaggactcaaattgcatttggatggatttagtgatgaaattgaactgcagaagaaggaa
gcttgggctctgcatgaatccagtgaccgaattgtagattgctttcacgaacttgttcct
gacatggcactagagtttccctttgaattagatgcatttcagaaggaggctatttattat
cttgagaagggggaatctgtttttgttgctgctcacacatcagctggaaaaacagtagtt
gctgaatatgcatttgctttagcatcaaaacattgcactagagctgtgtatactgctcca
ataaaaacaatcagcaatcagaaatatagagatttctgtggaaagtttgatgttgggcta
cttactggggatgtaagcatgaggccagaggcttcttgtctcatcatgaccacagaaatt
ttaagatcaatgctctaccggggtgctgatatcattcgagacattgaatgggttatattt
gatgaggtgcactatgtcaatgatgttgatagaggagttgtttgggaagaagtaattatc
atgcttccgagacacatcaacatcgtcctcctttctgccacggttcctaatactattgaa
tttgccgattggattggcaggacaaaacaaaaggaaataagggttacaggaacaacaaaa
agacctgtcccattggagcactgcctgtttcattctggagaactttacaaaatttgtgaa
agtgaaacatttctgcctcaggggttgaaagctgctaaagaagcttcaagaaaaaggaat
ttgactgctggtggtgcttctggaccaaaggtgggtcatgacaatgccagaggtccaaaa
cgtgaaaatacatctcgcatgaagcagcatggagctaatgtctctggaactggtagaggc
tatcaaaataatagcaatggccagagctattgggagatgaggagagcagatgcatcgatg
tggttgatgcttgtcaacaaactctccaaaaagtcattattgcctgtggttatattttgt
ttttctaagaatcgctgtgataaatcagctgatagtttcactggaactgacttcactagt
agctcagagaaaagtgagatccgacttttctgtgacaaagcattttcacgactgaaggga
tctgacagaaatttaccacaggttgttcgagtacagaatcttcttcgcagaggtattggt
gtacatcatgctggccttcttccaattgtaaaggaagttgtcgaaatgctattttgccga
ggggttatcaaggtcttgttttcaactgagacatttgcaatgggagtcaatgcacctgct
agaacagtagtttttgatactctacggaagtttgatggaaaggaatttaggcagctacta
tcaggggaatatactcaaatggctggtcgtgctggcagaagaggacttgacaagattggt
actgttattgtgatatgccgtgatgaactcccagaagaaagtgatttaaagcgtgttatt
gttggaagtgcaactcgacttgaatctcaatttcggctaacctatattatgattcttcat
cttcttcgggttgaggaattaaaggtagaagacatgcttaaaagaagttttgccgaattc
catgctcagaaaaagcttccagaaatgcaacagcttttgaagagaaagcttgaccagccc
agaaaggctattgaatgtataaagggtgaaccaaccattgaagaatactatgatttatat
tcagaagctgagacatacaacaaccagatatcagaagcaattttgcagtctcctagtgcc
caacagtttctcaatacgggaagagttgtaattgtaaaatcagaatcagcgcaggaccac
ttgcttggagtggttgtgaaaactccatcacccaataataagacatatattgtttttgtg
attaaacctgacatgccgtccattatgcaaagtgcgtctagtggtactaagcagaataaa
agtggtgcatttgaccaaggttattttgtaatgccaaagtcaagacgtgggcttgtagat
gaatatagtacatctgtttctgcccgtaaaggaaaaggtctcatcaacatcatgtttccc
cattgtggctctgccagtggaatgggctatgaagttcgagaagttgacagtaaagagttt
ctgtgcatatgcagtagcaaaattaaaattgaccaagtcggacttcttgaagatgttaac
agttctgtttattcaaagactgttcagttgcttgtggatttgaaatcagatggaaataag
tatcctccagctttggatcctgtcaaagatctgaagttgagagatgtgaagcttgtggca
acataccaaaagtggactagactattggagaagatgtcccagaatcagtgtcatgggtgt
ataaaattagaagaacacctcaaattggcgaaggagattaaaaaacatgaagaagaagtc
tatgctcttcagtttcaaatgtcagatgaagcacttaaacagatgcctgactttcagggc
cggatagatgttctgaagaaaattgaatgcattgatgaagaccttgtcgttcaaatgaaa
ggtcgtgttgcttgtgagatgaattctggggaggaactgatatgtacggagtgcttgttt
gagaaccaaatggatgaactggaacccgaagaagcagtggcgataatgtcagcttttgtg
ttccagcagaagaatacgtctgaaccgtcacttacacccaagcttgctgaagcgagacac
agattgtacaaaacagctataagacttggagagctccaagcacaatttaatctaccgata
aaccctgccgattatgcccaagaaaatctaaaatttggtcttgtagaggtggtttatgaa
tgggcaaagggtactccgtttgctgaaatatgtgagcttactgatgttcctgaaggcctg
atagtaaggaccattgtcaggttggacgagacatgtcgggagttcaaaaatgctgcagct
ataatgggtaattctgctctctgcaaaaaaatggaaattgcttctaatgcaataaagcgt
gacattgtatttgcggctagcttgtatattactggtttatga
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