Phaseolus vulgaris (common bean): 137831973
Help
Entry
137831973 CDS
T03093
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137831973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvu03041
]
137831973
03009 Ribosome biogenesis [BR:
pvu03009
]
137831973
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137831973
Spliceosome [BR:
pvu03041
]
Complex A
U1 snRNP components
U1 related factors
137831973
Complex B
137831973
Ribosome biogenesis [BR:
pvu03009
]
Eukaryotic type
Pre-60S particles
Helicases
137831973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
137831973
NCBI-ProteinID:
XP_068496006
LinkDB
All DBs
Position
6:complement(23058434..23066188)
Genome browser
AA seq
1180 aa
AA seq
DB search
MATAEAAPAGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPLTPPLP
APVASAPSLAPIPVAHTMQAGGMGPQHGQQLMQGQPSQQQVGHLAQQHGQSMPQQQQQSP
HMVQATQQKPSQGPQSSQQQNSLMTQSGPQPGLHQARQQMMQPHGQQMMQQPQGQQIQHQ
MPPQAIHSQHFGQGMPQDHGSHIVPPQVHQFPNQNMHYMSYQQNIITPRQSNSQHIQPNT
VSPGQPNPQQVQHSMHGQPFENQQTAFPKVEEAEFKNGSQVGLSPSQYPQRSTLPVQNNQ
NLPADTASGQMPNVGVNAGQPQQFRTALSGSVHQSPSAMPLQQGGSDLYYQHGPNFHKQM
SPGMMHGHPSNVHPAGQKMSHEDNLRSRAGNEYYYNSNKDMPTMGRRQPDMTQIPVPRNP
QDMRVGNAPFQNVMPSGNGSAIAGNAIPSMFVPPMGGPSPLSSNTLMRPSYMGSSEASDL
SPAEIYCQQHEVTATGGDIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQ
GRDIVAIAKTGSGKTLGYLIPAFILLRQRHNNSLNGPTVLVLAPTRELATQIHNEVIKFG
RSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEAD
RMLDMGFEPQIRKIVDEIPARRQTLMYTATWPKEVRKIAGELLVNPVQVNIGSADELAAN
KAITQYVEFVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARNIGRTFGAAAIHG
DKSQGERDWVLSQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTG
RAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKERGGMSRFD
SGGGRWETGGRGSMRDGGFGGRGGIRDGGFGGRGGGMRDGGFGGRGGGMRDGGFGGRGGG
MRDGGFGGRGGGGFGGRGGMRDGAGGRGDYFPGRGNRGRGSGGPRGGHVGWGRGERGMDD
RGLGRGRFDNRRDVSYKNRGRSYSRSPERVRTWDYSRSSSRSRSRSRSRSWSRGRSRSRS
WSRGRSYSRSRSRSRSHSRSPSYDRRDRSVQPLPDQKDLRAHEVGTSDPRMLPLSPGPGT
QANSSLGNEQVEQQPVVGSSDPGNPEAVAADLSHQSSSGV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcggaggcagctcctgcagggcttggccctagatatgcacccgatgaccct
actcttccacaaccgtggaagggattgattgatggcagtactggtcttttatactattgg
aatcctgaaaccaatgtcacgcaatatgaaaaacctgcccccttaacgccacccttgcct
gcgcctgtggcttctgcaccgagcttggcacctatacctgtggctcacacaatgcaggct
ggtgggatggggccgcaacatggacaacagttaatgcaagggcaaccctcgcaacagcag
gtgggtcaccttgcccaacagcatgggcaatcgatgccgcaacagcagcagcagagtccc
catatggtgcaggccactcagcagaaaccctctcagggtccccagtcttcccagcagcag
aactcactgatgacacagtcagggccgcaacccgggttgcatcaagccagacagcaaatg
atgcagccccatgggcagcaaatgatgcagcagcctcaaggacagcaaattcaacatcag
atgccgccacaggcaatccattcccagcattttgggcaaggaatgcctcaggatcatggt
tcacatattgtacctccacaagtacatcagttccctaaccaaaacatgcattatatgtca
tatcagcaaaacattattacacccaggcaatcaaactctcagcacattcagccaaacacg
gtctcacctgggcaacctaacccccagcaggttcagcatagcatgcatggtcagcccttc
gaaaatcaacaaacagcatttccaaaggtagaggaagcggagtttaaaaatggaagccag
gttggactttcaccttcccagtatccacaaaggagtaccttgcctgttcagaataatcag
aaccttcctgctgacacagcttctggtcaaatgcctaatgtaggtgtcaatgctggccag
ccccagcaattcaggactgccttatcaggcagtgtgcatcagtcgccctctgcaatgcca
ttgcagcagggtggatctgatttatattaccaacatggtcctaactttcataagcagatg
agcccaggaatgatgcatggtcacccatccaatgtccatcctgctggccaaaaaatgagt
cacgaggataatttgcgcagtagagcaggaaacgaatattactataattctaacaaagat
atgccaacaatgggtcgtcggcaaccagatatgactcaaatacccgttccaagaaatccg
caggatatgagggttggcaatgctccttttcaaaatgtaatgccaagtggaaatggaagt
gctattgctgggaatgctatacctagcatgtttgttcctccaatgggaggaccttcaccc
ctttcctctaacactttaatgaggccttcttatatgggatcttctgaggctagtgatctt
tcacctgctgaaatttactgtcagcaacatgaagttacagcaacgggtggtgacattccc
cctcctttcatgacatttgatgctactgggttccctccagagatattgagagagatatat
tctgctggtttctcaaatccaacaccaatacaggctcaaacatggcctgttgcactacaa
ggtagagacatagtagcaattgccaaaaccggctcggggaaaacattgggttacctaatc
cctgccttcattcttcttagacagcgacacaataattctctgaatggccccactgtattg
gttttggctccaactcgtgaacttgcgacacagatccataatgaggttatcaagtttggt
cgatcatcacgagtctcttgcacgtgcttgtatggtggagcacctaaagcccttcaactg
aaggaattagaccggggagcagacattgttgttgccacacccggtcggctcaatgatata
cttgaaatgaagaaaattgactttgggcaagtttcactacttgtgcttgatgaggctgac
agaatgcttgacatgggttttgagcctcaaatccgtaagattgtggatgagattcctgca
cggagacaaactctcatgtacacagcaacctggccaaaagaagtaagaaaaattgctggt
gaacttcttgttaaccctgtccaggttaacattggaagtgcagatgagcttgctgcaaat
aaagctatcacacagtatgttgaatttgtcccacaaatggagaagcagaggcgtttggag
cagattctcagatcccaagaacgtggttctaaggtcataatattttgctccacaaagagg
ttatgtgatcaactagctcgtaatattggtcgcacttttggggctgctgcaattcatgga
gacaagtctcaaggtgagagagactgggttttaagtcaattccggactggcaagtcacca
attctggttgccactgatgttgcagctcgtgggcttgatattaaggatataagggtggtt
atcaattatgatttccccactggaattgaggactatgtacaccgaataggaagaactgga
agagcaggtgctactggagtgtcatatacctttttctctgagcaggactggaaacacgca
ggtgacttaatcaaagttttggagggtgctaatcagcatgtgcttccagagttaagacag
atggctttgcgtgggccttcaaactttggaaaggaacggggtgggatgagtcggtttgat
tctggtggtgggcgttgggagactggtggtcgtggtagcatgagagatggtggctttggt
ggccgtggtggcattagggatggtggctttggaggtcgtgggggtggcatgagggatggt
ggttttgggggccgtgggggtggcatgagagatggtggctttggtggtcgaggtggtggc
atgagggatgggggatttggtggacgtggtggcggcggctttggtggacgtggtggcatg
agggatggagctggtggaagaggtgattactttcctggtaggggcaacaggggtagggga
tctggtggtcctcgcggtggtcatgttggttggggtaggggtgaacgtggtatggatgac
cgtggactgggacgtggccgatttgacaacagaagggatgtttcttacaaaaatagaggc
agaagttatagtcgtagcccagaaagagtccgaacatgggattatagtagaagtagcagc
agaagccgtagtagaagcaggagcaggagttggagcaggggtcgtagtcgcagtcgcagc
tggtcccgtggacgaagttacagtcgcagccggagcaggagccggagccacagccgcagc
cccagttatgataggcgggataggtcagttcaaccccttcctgatcaaaaggatcttagg
gcccacgaggtaggaacttctgatccaagaatgcttcccttgtctcctggtcctggcaca
caagcgaattcctctttgggaaatgaacaagtcgagcagcaacctgttgttggtagctct
gatccaggtaatccagaagctgtagcagcagaccttagtcatcaatcaagttctggtgtt
tag
DBGET
integrated database retrieval system
