Phaseolus vulgaris (common bean): 137832015
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Entry
137832015 CDS
T03093
Name
(RefSeq) endoribonuclease Dicer homolog 2-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pvu
Phaseolus vulgaris (common bean)
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pvu03036
]
137832015
Chromosome and associated proteins [BR:
pvu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
137832015
microRNA pathway
RISC loading complex
137832015
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
ResIII
Helicase_C
PAZ
Dicer_dimer
Cas3-like_C_2
SNF2-rel_dom
SWI2_SNF2
SLFN-g3_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
137832015
NCBI-ProteinID:
XP_068496066
LinkDB
All DBs
Position
6:23483116..23495886
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AA seq
1392 aa
AA seq
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MEEALEGEIDGNTQQQNNIRDALPFARSYQLEALDHALRENTIVYLETGSGKTLIAIMLL
RSYAHHLRKPSSSIAVFLVPQVVLVSQQSKAVRRHTDLKVGTYWGDMGVDFWDAAMWKQE
MEKHEVFVMTPAILLNCLRHSFLKLNMIKVLIMDECHHARGKHPYACIMTDFYHHQLNLG
VSDLPRIFGMTASPIKSKVGNSELSWSENIRTLITLMHSKVYTCVSEAVLAEFIPSSTPK
FKFYRDKGVEIALFRDLALKIRILKEQHVSTLTSSDFTQSAAESAQKRIEKIFCALMFCL
DELGVWLTLKAAESLSSNEFESFSWGHSGDRTVKNFILACVQTLKTYLPCGPQWSIGGNI
KSDVEMGLLTSKVCCLIDSLLEYRGLTDIRCIIFVQRVITAIVLQDLLNTLLPTINSWKT
KFIAGHNFGLQNQSRKKQNKIVEEFQMGLVNIIVATSILEEGLDVQTCNLVIRFDPSPTV
CSFIQSRGRARMQNSDYILMVNSGDSATCSRLEKYLTSGDIMRKEALRHSSLPCDPLEGD
QFDEETYRVASTDAFANLSSSISLIHLYCSRLPADGYFKPAPRWDKETGTLYLPKSCPLK
PIHVEGDNKILKNIACLEACKQLHKIGALTDNLVPDIVIEEAEVEEFGNEHYDENQPIYA
PFGLVNCVSNSSHTTYHCYLMEFSPNFCYHTSVQDVFLAIRIKLDPEIGCMQFDLDFDRG
SVSVKLRYKGTINLSSDQVLLCKKFQVTLLRILIDNCMNKFTTGLDKCFLKDDLEIDYLL
LPATGKRPNSTVDWLIVNSVNPSNIRCKYHQPHISTKSGLVCACKLQNALVCTSHAGGKV
YFYITTGIMELDTNSPMMVRNGEVTTYKKYFEQHHGIQLQFEHQRLLKAKHKFQVKNYSH
GLRQGKEREASQTFVELPPELCSIVMSPITDSIIYSFSLIPSIMHRLESVLGAFNLKNMY
SDHCTKNEIQTIKVLEAITSKRCKEAFHYESLETLGDSFLKYAASQQLFKTYQNHHEGLL
SVKREKIISNAALCKLGCSSGLPGFIRNEPFDPNVWIIPGDSSGSFKCTELVTKGKKNYV
YGKRKLKRKIVADVVEALIGAFLSTGGEKAALMFMDWVGIKVSFDKIPYERHFDIQPDKL
VNVKFLESQLKYSFRDRSLLVEALTHGSYMLPEVPRCYQRLEFLGDSVLDYLITWHLYNK
YPGMSPGQLTDMRSASVNNDCYAWCTIKHGLHKHVLHASQELHMHIAVTLDNFEKLSSSS
TFGYESETSLPKVLGDILESLAGAILVDSGYDKEVVWQSIRPLLEPLVTPETLKLHPIRE
FYELCQKRNYRIIQSVVSRKDGVTNYKMGVEADGVIHEYEYLGSALKDTAKKIVCKKLLN
SLKEREHLCKQV
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggcactagagggggaaatagatggcaacacacagcagcagaacaatattcgt
gatgctcttccatttgctagaagctatcaacttgaagcattggatcatgctttgcgtgag
aataccatagtgtacttggagactggttccggcaagactttgatagcgatcatgcttctt
cgcagctatgctcatcatctgagaaaaccttcttcttctattgctgtgttcttggttccc
caagttgtgttggtctctcaacaatctaaagccgtgagaaggcacacagatttaaaagtg
ggaacatattggggagacatgggggttgacttctgggacgctgctatgtggaaacaagaa
atggagaaacatgaggtttttgtcatgactcctgcaatattgctgaattgcctgaggcat
agcttcctgaaactgaatatgattaaggttttaataatggacgagtgccatcatgctagg
ggtaaacacccttacgcctgcatcatgactgatttttatcatcaccaattaaatttaggt
gtctctgatctccctcgaatttttgggatgactgcatctccaattaagtcgaaagttgga
aattctgaattatcctggtcagagaatattcggacactaattacattaatgcattctaag
gtatatacatgtgtaagtgaagctgtcctcgcagagttcataccatcatcaacaccaaaa
ttcaagttttatagggacaaaggagttgaaattgcattgtttagagacttagcattgaaa
atcaggatattaaaagagcagcatgtatccactttaacaagttcagatttcactcaatca
gctgctgagtctgcacaaaaaagaatagaaaagattttttgtgctttaatgttttgcctg
gatgagcttggtgtttggttgactttgaaggctgcagagtctttatcatcaaatgaattc
gaatcattttcatggggacattctggggatagaactgttaaaaactttattttggcctgt
gtgcagacactgaaaacttacttaccatgcggtcctcagtggtctattggtggcaatatt
aaatctgatgtggagatggggctgttgacctccaaagtttgctgtcttattgactctcta
cttgagtacaggggtttgactgacataagatgcataatttttgtgcaaagggtcattact
gccattgtccttcaggatctattgaataccttacttccaacaatcaatagctggaagact
aaattcattgctggacacaattttggattacaaaatcagtctaggaaaaaacaaaataaa
attgtggaagaatttcaaatgggattggttaacatcattgttgcaacatcaattcttgaa
gagggtttagatgttcaaacctgcaatctagtcattagatttgatccatctcctacagtg
tgtagttttatacagtcccgaggacgtgccagaatgcaaaattcagattacatattaatg
gttaacagtggggattcagctacatgttctcgactagaaaagtaccttactagtggggat
attatgaggaaggaggcattacgtcattcttcccttccatgtgatcctttagaaggtgat
caatttgacgaggaaacttatcgtgttgcaagcactgatgcctttgcaaatcttagttct
agcattagtttgattcacttatattgctcacggctccctgctgatgggtactttaaacca
gctccaaggtgggacaaagagactggaacattgtatcttcctaagagctgccctctaaag
cctattcatgtagaaggtgacaacaaaatcttaaagaatattgcatgccttgaagcatgc
aaacaacttcacaagattggagctctgacagataatcttgttcctgatattgtcattgaa
gaagcagaggtggaggaatttgggaatgaacattatgatgaaaaccaaccaatttatgcc
ccgtttggattggtaaattgtgtgtcaaatagtagtcacacaacataccattgttatttg
atggagttcagtccaaatttttgctatcatacatctgtgcaagatgtttttcttgccata
agaattaaacttgatccggaaattggatgcatgcaatttgatttggattttgacagaggt
agtgtctcagtaaaattaagatacaaaggaaccattaatctttcctcagatcaggttctt
ttgtgtaaaaaatttcaggtcactctgcttagaattctgatagataattgtatgaataag
ttcacaactggtttagacaaatgctttttgaaagatgatctagagattgattatcttctg
cttccagctactggtaaacgtccaaattcaactgttgattggttgattgttaattctgta
aatccatctaatattaggtgtaagtatcatcaaccccacataagtacaaaaagtggtcta
gtttgcgcttgtaagctacaaaatgcattggtgtgtacttcacatgctggtggcaaggtt
tatttctatatcactactggtataatggaactggacacaaactcgcctatgatggtaagg
aacggtgaagttactacatacaagaagtactttgaacaacatcatggtattcaattgcaa
tttgaacatcagcggcttctcaaagcaaaacacaagtttcaagttaaaaattactctcat
ggactgagacaaggaaaggaaagagaagcaagccagacctttgttgaattacccccagaa
ctgtgctctatagtaatgtcaccaataacagatagtataatttattccttctcacttatt
ccatcaatcatgcatcggcttgagtcagtgctcggagctttcaacttaaaaaatatgtat
tcagatcattgcacaaagaatgaaattcaaacaatcaaggtgttggaagcaatcacctca
aaaaggtgcaaagaggcctttcattatgagtcgctcgagactcttggtgattctttttta
aaatatgctgccagtcaacagctgtttaaaacctatcaaaatcaccatgaaggtcttctt
agtgtgaagcgggaaaagatcatatccaatgctgccctctgcaagttagggtgtagttct
ggacttccgggcttcatacgaaatgagccttttgatcctaatgtctggattattcctggt
gatagttctggaagttttaaatgcacagagttggttaccaaggggaaaaagaattatgtt
tatggaaaaagaaaattaaaacggaagatcgttgctgatgttgtggaggcactgattggc
gccttcctcagcacaggtggtgaaaaggctgcattgatgtttatggattgggttggaatt
aaagtgagttttgataaaataccctatgagaggcactttgacattcaaccagacaaactg
gtaaatgtgaaatttctagaatctcaattgaagtactcatttcgtgaccgttctctttta
gtggaagctctaacccatggttcctacatgctgcctgaagttcctagatgttatcagcga
ttagaatttctgggagattcagtccttgattatttgataacttggcatttgtacaataaa
tatcctggcatgtcccctggtcagttaactgacatgagatcagcttccgtgaataatgat
tgttatgcatggtgtaccattaagcatggattgcacaagcatgtactccatgcctcacaa
gaactgcatatgcatattgctgtcacacttgacaattttgagaagttgtcttcttcatca
acttttggatacgagtcagagacatcactccctaaggtactgggagacattttagagtct
ctagctggagctattcttgttgattcagggtatgataaggaggttgtgtggcaaagcatc
aggccactcttggaaccccttgtaacacctgaaacattgaagcttcatcctatcagagag
ttttatgaattgtgtcagaaaagaaactatagaattatacaaagtgtggtatctcgcaaa
gatggtgtgactaattacaaaatgggggtagaagctgatggagtcattcatgagtatgag
tatttaggttctgctcttaaggacacagccaagaagatagtctgcaagaaacttttgaat
tcccttaaggaaagagaacatttgtgtaaacaagtttga
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