Phaseolus vulgaris (common bean): 137832045
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Entry
137832045 CDS
T03093
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137832045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvu03021
]
137832045
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137832045
Transcription machinery [BR:
pvu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137832045
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
137832045
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
137832045
NCBI-ProteinID:
XP_068496119
LinkDB
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Position
6:complement(23800725..23815021)
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AA seq
697 aa
AA seq
DB search
MEDSEGVLSFDFEGGLDTAPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPTPSGTEPAAV
NVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQR
GSSYTQQAEKSQLPQGTNSTNQGVTGKPLPAESGNAQPQQQVQQSQQQQVSQNQIQNVAN
GQPNQASRAATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENV
ILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTR
HLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGV
NPDNGGENPDIVPFEDNEEEEEEESDEEDESFGHGVGPAGQGRGRGRGMMWPPHMPLPRG
ARPMPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFSVGPRAFAPYGPRFSGDFGGPPAAM
MFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQ
NTNRLAKRDQRTTDRNDRYGSGSEQGKSQDMLSQSGAPDDDMQYQQGYKANQDDHPAVNN
FRNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgagggagtcctcagcttcgatttcgagggtggcctcgacaccgctccc
tccgccgccgccgctccctccggcccgctcgtccagcacgactcctccgctgccgcttcc
gccgtgtccaacggtggtcctccagccccaaccccctccggaaccgaacccgcggccgtc
aacgtccccgggcggcggagcttccgtcagacggtatgccggcactggttgcgcagcctg
tgcatgaagggcgacgcgtgtgggtttctgcaccagtacgacaaggcgcggatgcctgtt
tgccgattcttcaggctctatggagagtgtcgagaacaggattgcgtgtataaacacacg
aatgaagacatcaaggagtgtaacatgtacaagttgggattttgtcccaatgggcctgat
tgccgatatagacatgcgaaatctcctggtcctccacctcctgttgaagaggtccttcag
aagatccaacatttatattcctacaattataactcatcaaacaaatttttccaacaaagg
ggttctagctatacccaacaagctgaaaaatcccagcttcctcaaggaactaattctaca
aatcaaggggtgactggaaaaccattaccagcagagtcgggaaatgcccagccacaacaa
caagttcaacagtctcagcagcagcaggtcagccagaaccaaatacaaaatgttgctaat
ggccagcctaatcaagccagtagagctgctacccctttacctcaaggaatatctaggtat
tttattgttaaaagttgcaatcgtgaaaatttggagttatctgtacaacaaggagtatgg
gcaacccaaaggagcaatgaatccaaactgaatgaagcatttgactctgtggaaaatgtg
atattgattttctcagtcaaccgtactagacatttccagggttgtgcaaagatgacatct
agaattggcggttctgttgctgggggtaactggaaatatgctcatggaactgcacattat
gggcgaaacttctcggttaaatggttgaagttatgtgaactgtctttccacaaaactcgc
catttaaggaatccatacaatgagaacttaccagtgaagataagtagagattgtcaggag
ctggagccttcaattggagagcaactggcatcgttgctttatcttgagccggatggtgaa
cttatggccgtttcagttgcagccgagtcaaaacgggaagaagagaaagcaaagggagtg
aatccagataatggtggagaaaatccagatattgttccatttgaagacaatgaagaagag
gaagaggaagaaagtgatgaagaggatgagagctttggtcatggtgtagggccagctggt
caaggcaggggtaggggcagaggtatgatgtggccacctcatatgcctcttccacgtgga
gcccgacccatgcctggaatgcagggctttaaccctgtaatgatgggtgatgggttgtcc
tatgggcccgttgcacctgacggttttggtatgccagatctttttagtgtggggccccgt
gcttttgcaccatacggtcccagattctctggtgattttggaggtcccccagcagccatg
atgtttcgtgggcgaccttctcagcctgggatgtttccaggtggtggctttgggatgatg
atgaatcctggacgtggtccctttatgggggggatgggggttgcaggggcaaatccacca
agaggtggtaggccggttaatatgcctccaatgtttccaccacctccacccctacctcag
aacacaaaccgtcttgccaaaagagatcaaagaactactgatagaaatgataggtatggc
tccggatcagagcagggtaagagtcaagacatgctcagtcaaagtggtgcacctgatgat
gatatgcagtatcagcaaggttacaaagcgaaccaggatgatcatcctgctgtgaacaac
ttccggaatgatgacagtgaaagtgaggatgaagcacctagaaggtcaagacatggagag
gggaaaaagaaaaggcgaggcccagaagatgttaatacaaactataatcattag
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