Phaseolus vulgaris (common bean): 137832646
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Entry
137832646 CDS
T03093
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137832646
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137832646
03041 Spliceosome [BR:
pvu03041
]
137832646
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
137832646
Spliceosome [BR:
pvu03041
]
Complex B
Other components
Prp19-related factors
137832646
Complex C
137832646
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
HAT_PRP39_N
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21
ARM_TT21_C
PPR
ARM_TT21_4th
SNAP
Motif
Other DBs
NCBI-GeneID:
137832646
NCBI-ProteinID:
XP_068497029
LinkDB
All DBs
Position
6:29092422..29098391
Genome browser
AA seq
823 aa
AA seq
DB search
MHKMPRIWIMYLQTLTNQKLVTRTRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIET
SLRVYRRYLKYDPSHIEDFIEFLLNSSLWQEASDRLASVLNDDQFYSIKGKTKHRLWLEL
CDLLTRHANEVSGLNVDAIIRGGIRKFTDEVGRLWTSLAKYYIRRGLPEKARDVFEEGMS
TVITVRDFSVIFDSYSQFEEIMLEESMLAYKMDDEGEENGFEEVEEEDIRFRGRLAEEDF
ERKILHGFWLNDKNDIDLRLARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNP
TKQILTYTEAVRTIDPMKAVGKPHTLWVAFAKLYEQHKDLANARVIFDKAVQVNYKTVDN
LASVWCEWAEMELKHKNFKGALELMRRATAEPSVEVKRKVAADGNEPAQMKLHKSLRLWT
FYVDLEESLGSLDSTRAVYERILDLRIATPQIIINYAYFIWENKYFEDAFKVYERGVKIF
KYPHVKDIWVTYLSKFVKRYGKNKLERARELFKSAVESAPADQVKPLYLQYAKLEEDYGL
AGEAMKVYDQATEAVPDNEKLSMYEIYISRAAEIFGVPETRRIYEKAINIYENAIKSDIS
NKDLLNKDIKTLSLKYAELEKSLGEIYRARELYGFASKYADPRSDPEFWNKWHEFEVQHG
NEDTFREMLRIKRSVSASNRQTHFLMQKDQTVNLDEAKDKLNQAGIPEDEMAALEMQLPP
AADNTVTKDRKVGFVSAGVESQSDGGIKTSANNEDIELPEDSDSDDGDDKIEIAQKDVPS
AVFGGLIRKRDEDDKNGEIDAAKDKDNENRLGALERIKRLKRN
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagatgccgcgaatttggattatgtatctgcaaaccctaaccaatcagaaattg
gtaactcggactcgcaggaccttcgatagggctctctgcgccctcccagtcacccagcac
gaccgtatctgggaaccttatcttgtgttcgtgagccagaagggtattcccattgagact
tctcttcgggtttatcgcaggtatttgaagtatgatccctctcacattgaggattttatt
gagtttttgcttaattcgagtctctggcaagaggcttctgataggctggcttcggtgctc
aatgacgaccagttttactccattaagggtaagaccaagcaccggctttggttggagttg
tgtgatttgctcacacgccatgccaatgaggtttctgggttgaatgtggatgctatcatt
aggggtgggattaggaagttcactgatgaggtgggtaggctttggacttcgcttgccaag
tattacattaggaggggtttgcccgagaaggctagggatgtgtttgaggagggtatgtct
actgttatcacggtcagggattttagtgttatatttgattcttactcgcagtttgaagag
atcatgcttgaagagagcatgcttgcttacaagatggatgatgagggtgaagaaaatggc
tttgaggaagtagaagaagaggatattcgtttcagaggaagattggcggaggaggatttt
gagaggaagattttacatgggttttggttgaatgacaagaatgacatagacttgaggttg
gctcggtttgattaccttatggagaggaggccggagttggctaacagtgtgcttttgcgt
caaaatcctcataatgtagaacagtggcacaggagggtgaagctctttgaagggaatcct
accaagcagatactgacttacactgaagcggtgaggacgattgatcccatgaaggcagtg
ggaaagcctcatactttgtgggttgcgtttgctaaactgtatgagcagcacaaagatctt
gccaatgcccgtgtcatatttgataaggcagtgcaggtgaactacaaaaccgtggataat
ctggctagtgtctggtgtgagtgggctgaaatggagttaaagcataaaaatttcaaagga
gcacttgagctgatgaggcgggctacagctgagccatcagttgaggtgaagcgaaaagtg
gctgcggatggaaatgaaccagcccagatgaagctacataagtccttgagattgtggaca
ttttatgtggatttggaggaaagcctaggttctttggactctacacgtgctgtttatgag
cgaattttggatttacgaatagccacaccacaaataatcatcaattatgcatactttata
tgggaaaataagtactttgaagatgcttttaaagtttatgaaagaggagtaaagatattt
aagtaccctcatgttaaagacatatgggttacatatctctctaaatttgtgaagagatat
ggaaagaataaattggagcgagcaagagaattatttaaaagtgcagttgaatcggcccca
gctgatcaagtaaagccgctttacctgcaatatgccaaactggaggaggactatggtcta
gcaggggaagctatgaaggtttatgatcaagcaacagaagctgttcctgacaatgagaaa
ttaagcatgtatgaaatatatatttctcgtgcagctgagatatttggtgtgcccgaaaca
aggaggatctatgagaaggcaattaatatctatgagaatgcaattaaatctgatatttcg
aataaggatcttttgaataaggacatcaaaaccttgagtttgaagtatgctgagctggaa
aaaagtttgggagaaatttaccgggcccgtgaattatatggatttgcatctaaatatgca
gatccacggtctgatcccgagttttggaataagtggcacgagtttgaggttcaacacggg
aatgaagatactttcagagaaatgcttcgtattaagcgaagtgtgtctgcaagcaacaga
cagacacattttctaatgcagaaggatcaaactgtgaatcttgatgaagccaaagacaag
ttgaatcaggctgggatccctgaggacgaaatggctgctttagaaatgcaattaccacca
gcagctgacaatacagtgacaaaagatagaaaagttgggtttgtgagtgctggagttgaa
tctcagtctgatggagggataaaaactagtgcaaataacgaggatatcgagttaccagaa
gacagtgattctgatgacggtgatgataagattgaaattgcacaaaaagatgttccttct
gctgtgtttggtggtttgattagaaagagagatgaggatgacaagaatggagagatagat
gctgcaaaagataaagataacgagaatcggcttggtgctcttgagagaataaagaggcta
aaacgaaattaa
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