Phaseolus vulgaris (common bean): 137834164
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Entry
137834164 CDS
T03093
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137834164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137834164
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137834164
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137834164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
137834164
NCBI-ProteinID:
XP_068498351
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All DBs
Position
11:complement(6216062..6226171)
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AA seq
658 aa
AA seq
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MSGLLNSSLNGSASNLPDGAGRSFATSFSGQSGAASPIFHHTGAIQGLHNIHGSFNVPNM
PGSLTSRNSTINNVPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGI
SVVGNPGFSSSTNGVGGSIPGILPTSGAIGNRNAVPGLGVSPILGNAGPRITSSVGNMVG
GGNIGRTGGGLSVPALASRLNLGANSGSSGLGMQGQNRLMSGVLPQGSPQVISMLGNSYP
SAGGPLSQSHVQAVSNLNSMGMLNDVNTNDSSPFDLNDFPQLTTRPSSAGGPQGQLGSLR
KQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDIHQKEQLHDNAVPMMQSQHFS
MGRSAGFSLGGTYSSHRAQQQQHAPSVSSGNVSFSSVNQDILHLHGSDIFPSSHSTYHSQ
TSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQ
TTQPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSDEPAKG
DPEFNVPQCYFAKQPPDLHQGYFSKFSVETLFYIFYSMPKDEAQLYASNELYNRGWFYHK
EHRLWFIRVSNMEPLVKTNTYERGSYHCFEPSIFETVRKDNFVLHYEMLENRPHLPQH
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctctgaatggatctgcttcaaatcttccagatggggcc
ggtcgatcttttgcgacatcgttttctggtcagtctggtgcagcctccccaatttttcat
cacactggagctattcaaggattgcacaatattcatgggagctttaatgttcccaacatg
cccggttcactaacgtcgagaaattcaactataaataatgtaccatcaggcggcgttcaa
caacccactggaagcctttctagtggaagatttacatccaacaatctaccagttgcattg
tctcagctatctcatggaagctctcatggacattcaggagtcaccaatagaggaggtata
agtgttgtaggaaaccctggatttagtagtagcacaaatggagttggtggttctattcct
gggattcttcctacatctggtgcaattggtaaccgaaatgctgttccagggttgggagtg
tccccgattttgggaaatgcaggtcctcgaatcactagttctgtgggaaacatggttggt
ggagggaatattggaaggactggtggaggattgtctgtgcctgctcttgcatctcgtcta
aatttgggtgcaaacagtggatccagtggtttaggcatgcaaggacagaatcgattaatg
agtggtgtgctcccacaagggtctccacaggtaatttcaatgctaggaaattcttatccc
agcgctggaggtccactttcccaaagccatgttcaagcagtaagtaacttgaactctatg
ggaatgttgaatgatgtgaataccaatgacagttccccttttgacctcaacgacttccct
caactgacaactcgtcctagttctgctggagggcctcaaggacagttgggttctttaaga
aaacagggtcttggtgtcagtcccattgttcaacaaaaccaagagtttagcattcagaat
gaagatttcccagctttaccaggattcaaaggcggtaatgcagattatgctatggatatt
caccagaaagaacaacttcatgacaatgctgtaccaatgatgcaatctcaacatttctct
atgggaaggtcggctggtttcagcttagggggtacatattcgtcacatcgagcacaacag
caacagcatgctccttcagtcagtagtggcaatgtctctttttcatctgttaaccaggat
attctccatttgcatggatcagatattttcccatcttcacattcaacctatcattcacag
accagtggacctcctggtattggattaaggcctttaaattctccaaatacagtttctggt
atgggttcatacgaccagcttatccagcaatatcaacagcatcaaaaccagtcgcagttc
cgcctacaaatgtcagctgtaaatcaatcttttagggatcagggcatgaagtctattcaa
accacacaaccagatccatttggtttgcttggcttgttaagtgtgatcaggatgagtgat
cctgaccttacatctcttgctcttggaattgatcttactacactggggttaaatttgaat
tcatcagaaaatcttcacaagacctttggttctccatggtctgatgaacctgctaagggt
gatccagagtttaatgtgccacaatgttattttgctaaacagccacccgatctacatcaa
ggatacttttcaaagttttcggtggaaacattgttttacatattttacagcatgcccaaa
gatgaagcacagttatatgcctccaatgagctttacaacagaggttggttttatcacaaa
gaacatcgtttgtggttcataagagtttccaacatggagccgctggttaaaacaaacaca
tacgagagaggatcttatcactgtttcgaaccaagcatatttgaaaccgtccgcaaggat
aattttgttcttcattatgaaatgttggaaaacagaccccatctgcctcaacattga
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