Phaseolus vulgaris (common bean): 137837293
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Entry
137837293 CDS
T03093
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137837293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137837293
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
137837293
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
RRP7
Motif
Other DBs
NCBI-GeneID:
137837293
NCBI-ProteinID:
XP_068502359
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Position
4:complement(12159276..12172748)
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AA seq
880 aa
AA seq
DB search
MDVDHDQPSAATAKAQALQTLAAGPLSSSVAKLAASSRCLPSDKDFHFYRNFEEFKVPVE
EIARESRSMLEAIGAAAHAAFPADVDDAYDWLVNVNDDVLERFDASMDEFRRVREEEEKT
GHPAKHPMEEDGFQLVSGRKKKGGRGNITPGMGSEASPATPGVTVATKDKKTMGPKPKIP
FHIPTIRRPQDEFSIVVNNANMPFEHVWLQTSDDGSRFIHPLEMLSVLDFVDRNPGDVVP
VKPPSIDSTPFKLVEEVKDLKELAAKLRSVNEFSVDLEHNQYRSFQGLTCLMQISTRAED
FVVDTLKLRIHIGPYLRDVFKDPSKKKVMHGADRDIVWLQRDFGIYVCNLFDTHQASKLL
SLERNSLEYILLHFCEVTANKDYQNADWRLRPLPDEMLRYAREDTHYLLYIYDLMRIKLF
ALSKESESSESSDTPLVEVYKRSYDVCMQLYEKELLTENSYLHIYGLQGAGFNAQQLAIV
SGLCEWRDIVARAEDESTGYVLPNKSVLEIAKQIPLTTSKLRRLVKSKHPYVEHNLDTVV
SIIRHSIQNAAAFEEASQLLKEAQAATASDVVPVTDGTEDPQSHKQDSKEPSPHQDTNAQ
IKIKSSSLTSEPPRVSLTVAELDRDANVGALSTAKGNGTTVQVLKKPPGAFGALLGNSAS
KRKLGPDKGKEDIKLEQIRSSVTLPFHTFSGSSEKSEPTVETPSAASEMLEPPKPDSNIV
SASPLDEIIMLESDTGAEGMELNNLENYNVHMEKKSGVFTSGKEDKDEPVSLSELSSNFK
KCFHSNDQNNKTRPHMKTEESSGLVQLKAFDYEAARKHVKFGEHKKHASSQDCVGEVEDS
NSKQRSTTGQEQASDSTKQLQQGKRRQAFPASGNRSATFR
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggaccacgatcaaccatccgccgcgacggcgaaggcccaggcgctgcagacc
ctagcagcgggtcctctctcctcatcggtggcaaagctcgctgcgtcctcgcgctgcctc
ccttccgacaaggacttccacttctaccgcaacttcgaggagtttaaggtccccgtcgag
gaaatcgcgagggagtcgcggtcgatgctggaggccataggcgccgcggcgcacgctgcg
ttccctgccgacgtggacgacgcctatgactggcttgtgaatgtgaacgatgacgttctg
gagcggtttgatgcatcaatggacgagttccggagggttcgggaggaggaagagaagact
gggcatccggcgaagcacccgatggaggaggatgggtttcagctggtttctgggaggaag
aagaaagggggaagagggaatatcactccagggatgggttctgaggcgagtccggcgaca
cctggagttactgtagcgactaaagataagaagacgatggggcccaagcccaagattccg
tttcatattccgacgataaggagaccgcaggatgagtttagtatagtggttaataatgca
aacatgccttttgagcatgtgtggttgcagactagcgacgatgggtcaaggttcattcat
ccgctggaaatgctctctgttttggattttgttgatagaaatcctggggatgttgtgccc
gtgaagcctccgtcaatagatagcactcctttcaagcttgtggaggaagtcaaagattta
aaggagttggctgctaagctgcgttctgttaatgaattttcggttgatttggaacataat
caatatcggtcatttcaaggtttgacttgccttatgcaaatctcaacaagggctgaagat
tttgttgttgacacattgaagcttcgcattcatataggaccctatcttagagatgttttc
aaggacccttccaagaaaaaggtcatgcatggtgcggatcgtgatattgtgtggcttcaa
cgagactttggaatttacgtttgtaatttgtttgacactcatcaggcttcaaagttgtta
agcttggagagaaatagtttggagtatattttgctccatttttgtgaagttactgcaaac
aaagattaccaaaatgcagactggagactacgcccacttcccgatgagatgctaagatat
gccagagaagatacacactatctgttatatatatatgatttaatgaggattaagttattt
gccttgtctaaggagtctgaaagttctgagtcttcagacactcctctggtggaggtctac
aagcgaagttatgatgtctgcatgcagctgtatgagaaagaacttttgacagagaactcc
tatcttcatatatatgggttgcaaggagctggtttcaatgcacagcagcttgccattgtt
tctggactgtgtgaatggagggacattgttgcccgtgcagaggatgagagtacaggatat
gtattgccaaataaatctgttcttgaaatcgctaagcagattcctcttactacaagcaaa
ctaaggcgattagtgaagtcaaaacacccttatgttgaacacaatcttgatacagttgtc
agcatcattagacattctattcagaatgctgctgcatttgaggaagcttctcaactgttg
aaagaagcacaagctgccactgcatcagatgtagtcccagttactgatggaactgaagac
ccccaatcccataaacaagattctaaggaaccttcgccgcatcaagatacaaatgcacaa
ataaaaatcaagtccagtagtcttacatctgagccaccaagggtcagtctcacagttgca
gagctggatagggatgcaaatgttggtgcactttctactgcaaagggaaatggaacaact
gttcaggtgctaaaaaagcctcctggtgcttttggggcactgctggggaattcagcttca
aagaggaagcttggtcctgataagggcaaggaagatatcaagttagagcagattagatct
tccgttactcttcctttccatacattttcgggtagcagcgagaagtcagaacctacagta
gaaactcctagtgcagcgtctgaaatgttagagccaccgaaacctgattctaatatagtt
tctgcctctcctctagatgagattataatgctagaatctgatacgggtgcagagggtatg
gagctgaataacctagaaaattacaatgtgcacatggagaaaaaatctggtgtgttcact
tcgggaaaagaggacaaagatgaaccagtgtctctctcggaattatcatcaaattttaaa
aaatgctttcattcaaatgatcaaaataataaaaccagaccgcacatgaaaactgaagag
tccagtggcttggtgcagctgaaggcatttgattatgaagctgcaaggaaacatgtcaag
tttggagaacataaaaagcatgcatcttcccaggattgtgttggtgaggtagaggactca
aatagcaagcaacgttcgacaactggacaggaacaagctagtgattcgactaaacaattg
cagcaaggtaaaagacgtcaagcctttcctgcttctgggaatcgtagtgcaacatttcgc
taa
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