Phaseolus vulgaris (common bean): 137837622
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Entry
137837622 CDS
T03093
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137837622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvu03019
]
137837622
Messenger RNA biogenesis [BR:
pvu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
137837622
U7-dependent histone pre-mRNA processing factors
137837622
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
BPS
Motif
Other DBs
NCBI-GeneID:
137837622
NCBI-ProteinID:
XP_068502793
LinkDB
All DBs
Position
4:39371002..39383036
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AA seq
739 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSIDDFNFLIDCGWNDHFDPSLLQPLSRVASTIDAVLV
SHADILHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID
SAFQSVTRLTYSQNHHLTGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RHLNGTALGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLRAGGNVLLPVDTAG
RVLELILMLESYWSDENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFL
LKYITLLINKTELDNAPEGPKVVLASMASLEAGFSHDIFVEWANDMKNLVLFTERGQFAT
LARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQNRIKKEALKASLMKEEELKTSHGS
DNNNSDPMVVDSGNNHVPPEVAGPRGGGYRDIYIDGFVPPSTSVAPMFPCYENTLEWDDF
GEVINPDDYVIKDEDMNQIAMHGGGDINGKLDEGAAGLILDTKPSKVVSDERTVQVKCSL
VYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVSAPQIDETI
DVTSDLCAYKVLLSEKLMSNVLFKKLGDYEVAWVDAVVGKTESDTLSVLPVSEAAPPHKS
VLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDATQKGGGSGAQQIVIEGP
LCEDYYKIRDYLYSQFYLL
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgggaacgtcagtgcaggtaacgccactgtgtggagtgtacaatgagaaccctctctcg
tatttggtctccattgatgacttcaacttcctcatcgactgtggctggaacgaccacttc
gacccgtccctccttcaacccctctccagggtagcatcaaccattgatgctgtcttggtt
tcacatgctgatatacttcaccttggtgccctcccttatgccatgaagcagcttggactc
tctgcccccgtttattcaactgagcctgtctacagattgggccttctcactatgtatgac
cagtacctttcaagaaagcaagtgtccgagttcgatctgttcacactggatgatattgat
tctgctttccagagtgtaacgaggctaacatattctcagaatcatcatctgacaggcaaa
ggagaaggaattgtgattgcgcctcatgttgctggacatcttttgggaggtactgtttgg
aaaattacaaaagatggggaggatgtcatatatgctgttgattttaatcataggaaagaa
aggcatttgaatggaactgctctaggttcttttgtgcggcctgctgttctaataactgat
gcttacaatgctttgaacaatcagccttacagacgtcaaaacgacaaagaatttggagat
atcttaaagaagactctaagagcaggtggcaatgtattactaccagttgacactgcagga
cgagtgttggaacttattctgatgttggaatcgtattggtctgatgaaaatttgaactac
cctatatacttcctcacatatgttgcttccagcacaattgattacgtgaagagtttcctt
gagtggatgagtgattctatagcaaagtctttcgaaaaaactcgtgaaaatatatttctt
ctgaagtatattacccttctgattaacaagactgagcttgacaatgctccagagggtcca
aaggtggttctagcatccatggcaagtttagaagcaggtttttctcatgatatatttgtt
gagtgggccaatgatatgaaaaatcttgtgctttttactgaaagaggccagtttgccaca
ctagctcgtatgctccaagctgatccacctccaaaagctgtcaaagttgttgtttccaag
cgtgttcctttggttggggaagagctaattgcctatgaagaagagcaaaatcgaataaaa
aaagaagctttaaaagccagtcttatgaaagaggaagaattgaaaacatctcatggctct
gataataataatagtgatccaatggtcgttgattctggcaataatcatgtaccaccagaa
gtggctggtccacgaggtggaggataccgggatatatatattgatggatttgttccccct
tccacgagcgttgctccaatgtttccctgttatgagaatacattagaatgggatgatttt
ggtgaagtcataaatccagatgattatgtaattaaggatgaagacatgaatcagattgca
atgcatggaggtggtgatataaatggaaaacttgatgaaggtgctgcaggtttgatactt
gatacaaagccatcaaaagttgtatctgatgaaaggactgtgcaagttaagtgttcgttg
gtttacatggattttgaaggacgttcagatggaagatccattaaaaatattctatctcac
gtggctcccttgaagctggttttggtgcatggatcagctgaagctactgagcatctgaag
cagcactgcctaaagcatgtttgtcctcacgtttctgctccccaaattgatgagacaatt
gatgtgacctctgatttatgtgcttacaaggttctactatccgagaagctaatgagtaat
gtactcttcaaaaagctgggagattatgaagtagcttgggttgatgcggtagtaggcaag
acagaaagtgacacgctttcggtgctccctgtttctgaagcagctcctccccataaatct
gttcttgttggcgatttgaaattggcagatatcaaacagtttctctccagcaagggtgtt
caggtggagtttgctggtggggctctacgttgtggtgaatatgtaactcttcggaaagtt
ggggatgcaactcagaagggtggtggttctggtgcccagcaaattgttattgaaggtcct
ctgtgcgaagattactacaaaattcgtgactatctgtattcacagttttatttgctttag
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