Phaseolus vulgaris (common bean): PHAVU_001G214700g
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Entry
PHAVU_001G214700g CDS
T03093
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pvu
Phaseolus vulgaris (common bean)
Pathway
pvu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHAVU_001G214700g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvu03041
]
PHAVU_001G214700g
03009 Ribosome biogenesis [BR:
pvu03009
]
PHAVU_001G214700g
Enzymes [BR:
pvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PHAVU_001G214700g
Spliceosome [BR:
pvu03041
]
Complex A
U2 snRNP components
U2 related factors
PHAVU_001G214700g
Complex B
PHAVU_001G214700g
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
PHAVU_001G214700g
Ribosome biogenesis [BR:
pvu03009
]
Eukaryotic type
90S particles
Helicases
PHAVU_001G214700g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
FtsK_SpoIIIE
T2SSE
AAA_30
AAA_7
Flavi_DEAD
AAA_33
NACHT
PhoH
TsaE
Motif
Other DBs
NCBI-GeneID:
18642128
NCBI-ProteinID:
XP_007163202
UniProt:
V7D1Y3
LinkDB
All DBs
Position
1:47795412..47799768
Genome browser
AA seq
724 aa
AA seq
DB search
MGMERKRKVSLFDVVDDSVAKIAKYNGGANNSVANALINHWNARPYTQRYFEILEKRKTL
PVWHQKEEFLKVLKDNQTLILVGETGSGKTTQIPQFVLEAVQLETPDKRRKMMIACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERY
KVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPG
RLHPVEIFYTQDPERDYLEAGIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEISN
LGDQVGPVKVVPLYSTLPPAMQQRIFEPPPPPLKEGGPPGRKIVVSTNIAETSLTIDGIV
YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
LTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADNVRQQLVRIMARFNLK
QCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWV
IYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKSREKEKEQT
RSRR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgggtatggaaagaaagaggaaggtgagcttgtttgacgttgtagacgattcagtggcg
aagattgcgaaatacaatggcggcgctaataacagcgtcgccaatgctctcatcaatcac
tggaacgcgaggccttacacgcaaaggtacttcgagattttggagaagagaaaaaccctt
cccgtttggcaccagaaagaagagttcttaaaggttctcaaagataaccagactttgatt
cttgtcggtgaaactggtagtggaaaaaccacacagattcctcagtttgttttggaggct
gtccagttagagacaccagataagcgtaggaagatgatgattgcgtgcactcagcctcgg
agagtggctgcgatgtcagtttcgcgtcgtgtggctgaagagatggatgtaaccattggg
gaagaggttggttacagcatcagatttgaagactgcagtagtgcgaggacagttttgaag
tatctaaccgatggtatgctcttaagggaagcaatgactgatccgcttttggagcggtac
aaggttattattcttgacgaagctcacgagaggacattggccactgatgtgttatttggc
cttctgaaagaagtgcttaaaaatagacctgacttgaagttggttgttatgagtgctact
cttgaagctgaaaagtttcagggctatttttttggtgcccctctcatgaaagttcctgga
aggctacatcctgttgaaattttctatactcaggatcctgaaagggattacttggaggct
ggcattaggacagtggtacagatacacatgtgtgaaccacctggagatatacttgtattt
ctgactggagaggaagagatagaagatgcttgccgcaaaataacaaaagaaatttctaat
ctgggagatcaggtgggccctgtcaaagtggtacccctgtattctacccttcctccagct
atgcagcagaggatttttgagccaccaccacctccactgaaggagggtggacctcctgga
aggaagattgtggtctcaacaaacatagcagaaacttccttgacaattgatggtattgtt
tatgtcattgaccctggttttgctaagcagaaggtttataacccccgagttcgtgtggag
tctttattagtatcaccaatatcgaaagccagtgcacatcagagatctgggcgtgctgga
agaactcaaccagggaaatgctttagactttacacagagagaagtttcaataacgatctt
cagccacagacctatccagaaattttaagatcaaatcttgccaatacagttcttactttg
aaaaaactgggcatagatgatttagtgcattttgatttcatggacccgcctgctcctgag
accttaatgcgtgcattggaggtgttgaattacttgggtgcactggatgatgatggtaac
ttaactaagctaggtgaaattatgagtgaatttcctttggatccacagatgtcaaagatg
ctcgttgtcagtcctgaattcaactgttcaaatgagattctgtcagtttctgccatgctt
tcagtacccaattgctttgtccggcctagggaggcacaaaaagctgcggatgaagctaaa
gctaggttcgggcacattgatggagatcacctcacgctgttgaatgtctatcacgcatac
aagcaaaataatgaggatccctcttggtgctatgataactttgtaaatcatagggcatta
aaatcagctgataatgttagacaacaattagttcgtatcatggcccggtttaatctgaag
caatgcagcactgactttaatagccgcgactactatgtcaacataagaaaagctatgctg
gctgggtatttcatgcaggtagctcatttggagcgtacaggtcactacttgacggtgaaa
gacaaccaggtggtgcatttgcatccatcaaattgcctggaccacaagcctgaatgggta
atttataatgaatatgttcttaccagtcggaactttattcggactgttacagacatacga
ggggaatggttggttgatatagcaccacattactatgatttgtctaatttcccccaatgt
gaggcaaagcgtgttctagagaaactttacaagagccgagaaaaggagaaggagcaaacc
aggagccgcagataa
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