Patella vulgata (common limpet): 126812291
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Entry
126812291 CDS
T09576
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03013
Nucleocytoplasmic transport
pvul03015
mRNA surveillance pathway
pvul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126812291
09122 Translation
03013 Nucleocytoplasmic transport
126812291
03015 mRNA surveillance pathway
126812291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvul03019
]
126812291
03041 Spliceosome [BR:
pvul03041
]
126812291
Enzymes [BR:
pvul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126812291
Messenger RNA biogenesis [BR:
pvul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126812291
Spliceosome [BR:
pvul03041
]
Complex C
Other components
EJC/TREX
126812291
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126812291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
126812291
NCBI-ProteinID:
XP_050394554
LinkDB
All DBs
Position
1:complement(9444747..9455934)
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AA seq
426 aa
AA seq
DB search
MADIAEEKKEKKIGFDYQDDIEPEFEAACDDIAFKGTYASIHSSGFRDFLLKPELLRSIV
DCGFEHPSKVQHECIPLAVLSMDILCQAKSGMGKTAIFVLSTLQQLEPVDGQVSVLVLAH
TRELAFQTSKQFEIFSKYMNNVKVAVFFGGLSVKKDEDVLKKNCPHIVVGTPGRLRALIR
SKALSLNHVKHFILDECDKMLAEIDMRRDVQEIFRMTPHEKQVMMFSATLSKDVRPICKR
FMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCM
ALAQLLQEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITLISNENDAKILNDVQERFEVSIAELPDEIDIS
FFIEGR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggccgatattgcagaagagaaaaaagagaaaaaaatcggatttgactaccaagatgat
atagagccagagtttgaagcagcatgtgatgatatagctttcaagggaacctacgcatct
attcacagttctggtttcagagatttcttgttgaaacctgaacttctcagatccattgtt
gattgtggttttgaacatccttctaaagttcagcatgaatgtattcccctagccgtctta
tctatggatatactgtgccaggctaagtctggtatgggtaaaactgctatatttgtgttg
tctactttgcaacaacttgagccggttgatggacaggtatctgttttggttctggcccac
acccgtgaattggccttccagactagcaagcaatttgaaatattcagcaagtacatgaac
aacgtgaaagttgcagtgttttttggtggtttgtcggtgaagaaagatgaagatgtgttg
aagaagaattgtcctcatattgttgttggtacaccaggtcgtcttcgggccttgattcgc
agtaaagcactcagtctaaaccatgtgaaacattttatactggatgaatgtgacaaaatg
ttggctgaaattgatatgagaagggatgttcaagagatattccgaatgacaccacatgaa
aaacaagttatgatgtttagtgctacgcttagtaaagatgtccgaccaatctgtaaaaga
tttatgcaagatcctatggaagtttatgttgatgacgattctaaactaactctacatggt
ctacaacaacattatgttaaactcaaggacaatgaaaagaacagaaagttatttgaatta
ttggatgttttggaattcaatcaggttattatatttgtaaagagtgtacagagatgtatg
gcattggctcaattattacaagaacaaaattttcctgctatagccattcacagggcaatg
acacaagaagaaagattgtcccgttaccaacaatttaaagatttccagaaacgtattttg
gtagctacaaatttatttggtcgtggtatggatattgagagagttaatattgtctttaac
tatgacatgcctgaagattcagatacataccttcatagagttgccagagctggtcgattt
ggtactaaaggtttagccatcacacttatatcaaatgaaaatgatgctaaaatattaaac
gatgttcaagagagatttgaagtgagcatcgctgaattaccagatgaaatagacatatcc
tttttcattgaaggacgataa
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