Patella vulgata (common limpet): 126814674
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Entry
126814674 CDS
T09576
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126814674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvul03041
]
126814674
03009 Ribosome biogenesis [BR:
pvul03009
]
126814674
Enzymes [BR:
pvul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126814674
Spliceosome [BR:
pvul03041
]
Complex A
U2 snRNP components
U2 related factors
126814674
Complex B
126814674
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
126814674
Ribosome biogenesis [BR:
pvul03009
]
Eukaryotic type
90S particles
Helicases
126814674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
Flavi_DEAD
T2SSE
AAA_29
NACHT
AAA_7
AAA_30
TsaE
PhoH
HMUD2
AAA_25
Motif
Other DBs
NCBI-GeneID:
126814674
NCBI-ProteinID:
XP_050395939
EnsemblRapid:
ENSPVUG00005000124
LinkDB
All DBs
Position
3:3620111..3635853
Genome browser
AA seq
727 aa
AA seq
DB search
MSKRHRIDVGDAQPKRNRETSPEDKNEKKHKSIFEEFNIPRPTIQMNPFTGLPFTPRYYQ
LYNKRSQLPVWEYKDKFMKMMTDHQMIVLVGETGSGKTTQIPQWCLEWVRARYNKKGVAC
TQPRRVAAMSVAQRVSEEMDIGLGQEVGYSIRFEDCTSSKTLLKYMTDGMLLREAMSDPL
LEAYGVIMLDEAHERTLATDILMGLLKEVARQRNDLKIIVMSATLDAGKFQTYFDNAPLM
SVPGRTHPVEIFYTPEPERDYLEAAIRTVMQIHMCEEQDGDLLLFLTGQEEIDEACKRMQ
READNLGSEIGDLKCIPLYSTLPPNLQQRIFEQPPPKKPNGAVGRKVVVSTNIAETSLTI
DGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAY
KNEMQQNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALD
DDGELTELGSMMAEFPLDPQLAKMVIASCDFSCSNEILSITAMLSVPQCFVRPSEVKKAA
DEAKMRFAHVDGDHLTLLNVYHAFKQNHEDNQWCYDNFVNFRSLKSADNVRQQLARIMDR
FSLRRASTDFNSRDYYINIRKALVSGFFMQVAHLERTGHYLTAKDNQVVQLHPSTVLDHK
PEWVIYNEFVLTTKNYIRTVTDIKPEWLIKIAPQYYDMSNFPQSEARRILERIIAKYENR
QNSEQQQ
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgacatcgcatagatgttggcgatgctcagccgaaaagaaacagagaaacc
agcccagaagataaaaatgaaaagaaacacaaatctatatttgaagaatttaacattccg
agaccaaccattcaaatgaacccatttacaggtctaccatttacaccgagatattatcag
ctgtataacaagagatcacagttaccagtatgggaatataaagataaatttatgaagatg
atgacagatcatcagatgattgtacttgttggtgaaacaggttccggtaaaacaacacag
ataccccagtggtgtttagaatgggtaagagctagatataataaaaagggtgtggcttgt
acccagccacgtcgagtagccgctatgtccgtagctcagcgagtgtcagaagaaatggat
attggtttaggtcaagaagtgggttattctatacgatttgaagattgtacatcgtctaaa
acattattaaaatatatgacagatggtatgttattacgagaggctatgtccgaccctcta
ttagaagcctatggtgttataatgttggatgaagctcatgaacgtacactagctacagat
attctcatgggtttattaaaagaggttgctaggcaacgaaacgatttaaaaattattgtt
atgagtgctactcttgatgccggtaaatttcagacgtattttgacaatgccccgttaatg
agtgtacctggtcgtacccatcccgtcgagatattctacacaccggaaccagaacgtgat
tatctcgaggcagccattagaaccgtgatgcagatacacatgtgtgaagaacaagatgga
gatctattgttatttttaacgggacaagaggaaattgatgaagcatgtaagagaatgcag
agagaagcagataatctgggttccgagatcggggatttaaaatgtatccctctttattct
accctaccccctaatctacaacagaggatctttgaacagcctccccctaaaaaaccaaac
ggagccgttggacgtaaagttgtggtatcgactaacatcgctgaaacatcgttaactatt
gatggtgtggtatttgtcatagatccaggatttgcaaagcaaaaggtatacaatccaaga
attcgtgttgagtcattgttagttacggctattagtaaagccagtgctcaacagagggca
ggtcgagctggacgtacacgaccaggaaaatgtttccggttatacacggagaaggcatat
aaaaacgagatgcaacagaatacgtatcctgagattttaagatcgaatcttggatccgtt
gtattacagttaaagaaattgggtatcgatgatttggttcattttgatttcatggatcct
ccagcgccagaaacactgatgagagctttagaattattgaattatctggctgctcttgat
gatgacggagaattaacggaactgggttccatgatggctgaattccctctcgatccacag
ttagcgaaaatggtgatagctagttgtgattttagctgttccaatgaaattctctccatc
acggccatgttatcagtcccgcagtgttttgttagaccatcggaagtaaagaaggccgct
gacgaagccaagatgagatttgcccatgttgatggtgatcatctgaccttgttgaatgtc
taccacgctttcaaacagaaccatgaggacaaccaatggtgctacgataattttgtcaac
ttccgatctttaaagagtgccgacaacgtacgacaacaattggcaaggattatggataga
tttagtttacggagagcgagtacagatttcaacagtcgcgattattatataaatatacgt
aaagctctcgtatctggtttctttatgcaggttgcccatctagaaagaacaggacattat
ttaacagctaaagataaccaggttgtccaactacatccatcgacggttttagatcataaa
cccgagtgggttatatataacgagtttgtattaacaactaaaaactatatacgaacagtt
acagatataaaaccagaatggttaataaagatagccccacagtactacgatatgtccaac
ttcccccaatcagaagccaggcgaattcttgagagaattattgctaaatacgaaaaccga
cagaactcggaacaacaacaataa
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