Patella vulgata (common limpet): 126815436
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Entry
126815436 CDS
T09576
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126815436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvul03041
]
126815436
Enzymes [BR:
pvul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126815436
Spliceosome [BR:
pvul03041
]
Complex C
Other components
Step II factors
126815436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
ResIII
T2SSE
Flavi_DEAD
SRP54
AAA_7
Sigma54_activ_2
ATPase
AAA_30
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
126815436
NCBI-ProteinID:
XP_050397027
LinkDB
All DBs
Position
3:89824058..89829644
Genome browser
AA seq
1235 aa
AA seq
DB search
MDKFDTNDEESVHMLEGTSGKEIGGLVVMKKGPSNNKESFKFTKPSVSLLGLDRLAAEKR
LSQQNENRSSKKSKIMSFRDENDEDSSDDDDDENENATSRHGNRKDRHYRRNKEETPSHP
GGVSRAAKERHDRHHRDRDRGVYASSKKDKYKNSRKDDRRRSRDRGDRSDRSSRSRYDDD
RSERSDRPRHRGRSYKDWEETPSHSYDDDLATPNIKVKDTPSRSNWEDDDFTPPMKSSWD
LLTPGSDSKHDSDRDIRSHRSHKSDSYRSSKSVKMSGHRKYMDDTPKATPSYKYNSWMKN
SKKIVYTPREDKKGPKFEGEEDGLEWEDEQKRLDREWYGMDEGYDDNHNPFSGTSEEYTR
KKEADMEAKKKKRMSARQRQINKDIDMWETNRMLRSGVVTKTDYDEDFEEDNEARVHLLV
HNIVPPFLDGRIVFTKQPEPVVPVKDPTSDMAIVSRKGSLVVRTFREQKERKKSQLKQWE
LAGTRMGDVLGIEKKEEEPGKSDEQMDFKADHKFADLMQDKTEAVSEFAKRKSIKSQRKY
LPIFAVRNELLNIIRDNSIVIIVGETGSGKTTQLTQYLHEDGYTKYGLVGCTQPRRVAAM
SVAKRVSEEMEVSLGEEVGYAIRFEDCTNENTMIKYMTDGILLRESLRESDLDHYSAVIM
DEAHERSLNTDVLFGLLRDVVSRRQDLKLIVTSATMDATKFSNFFGNVPIYTIPGRTFPV
DVMFSKNPVEDYVDASVKQTLQVHLQGLEGDILIFMPGQEDIEVTCELLGERLDELDDAP
PLAILPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDAGYCKLKVY
NPKIGMDALQIYPISQANANQRSGRAGRTGPGQCYRLYTHRQYKDELLACTVPEIQRTNL
ANVVLLLKSLGVQDLLQFHFMDPPPQDNILNSMYQLWILGALDNTGSLTPMGRQMVEFPL
DPALSKMMIVSLDMECSAEMLTIVSMLSVPTIFYRPKGREEDSDGAREKFQVPESDHLTY
LNVYQQWKRNSYSSSWCGEHFIHIKAMRKVREVRQQLKEIMDQQKMDMISCGNEWDIIRK
AICSAYFHQAARLKGLGEYVNCRTGMPCHLHPTSALFGMGYTPDYIVYHELVMTSKEYMQ
CVTAVDGQWLAELGPMFYSIKDASKSRVERKRQEVDEMVEMEEEMRRADELIKARKEQQE
KAVLSSTRSQIATPGRREPGTPGSTPRRTPAKFGL
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggataaatttgatacaaatgatgaagaatctgtacacatgcttgagggaacttctggc
aaagaaatagggggcttagttgttatgaaaaaaggcccttcgaacaacaaggaatcattt
aaatttacaaaaccatccgtttcgttactaggattggataggttagcagccgagaaacga
ttaagtcagcaaaatgaaaatcgttcgagtaaaaaatccaagattatgtcttttagagat
gaaaatgatgaagatagtagtgatgatgatgatgacgaaaatgaaaatgccacaagcaga
catgggaatcgcaaagatcgccactatcgacggaataaagaagagactccgtcccatcca
ggaggtgtcagtcgagctgctaaagagagacatgatcgtcaccatagggatagggataga
ggtgtttatgcgtcctctaaaaaagacaaatataaaaactcacgtaaagatgaccgacgt
cgaagcagagacagaggtgaccggagtgaccgtagttctagatctagatacgatgatgac
agatcagagagatctgatcgacctagacacaggggtcggagttacaaagactgggaggaa
acaccaagtcacagttatgatgatgatttagcgactccaaatataaaagttaaagacact
ccatctcgatctaattgggaggacgacgattttactcctcctatgaaatcaagttgggac
ctcctgacccccggttccgattccaaacatgattctgacagagacattcggagtcatcgt
tcccataaatcagattcttataggtcatcaaagtcagtgaaaatgtccggacatagaaag
tacatggatgatactccaaaagctactccgtcatataagtataactcttggatgaaaaac
tctaaaaagattgtttacacacctcgagaggataaaaaaggtccgaagtttgaaggggaa
gaagatggcttagagtgggaggacgaacaaaaacgattagatcgcgaatggtacggaatg
gatgaaggttacgatgacaatcataatcccttctccgggacatcggaggagtacacacgg
aagaaagaggctgacatggaagcaaagaagaaaaagcgaatgtccgcacgacagagacag
attaataaagatattgacatgtgggaaaccaatcgaatgctgagaagtggcgtcgttacg
aaaactgattatgatgaagatttcgaagaggacaatgaggcccgagttcacttgttagtt
cataatattgtacccccgtttctcgatggacgaattgtgttcactaaacagcctgaacct
gtcgttccggttaaagatcccacttcggacatggctatcgtttctagaaagggtagtcta
gtggttcggactttccgtgagcaaaaagaacgtaaaaaatctcagttgaaacagtgggaa
ttggcaggaactcgaatgggggatgttttaggtattgaaaaaaaggaagaagaacctgga
aaatctgatgaacaaatggatttcaaagctgatcacaaatttgcagatttgatgcaagat
aagacagaagctgtaagtgaattcgctaaaagaaaatccattaaatcacaaagaaaatat
cttcctatatttgcggtgaggaatgagctgttaaacattattcgtgacaacagtatcgtg
attattgttggtgaaacgggctcgggaaaaacgacacagcttactcaatatttgcatgaa
gacggttacaccaaatatggacttgtcggttgtacccaaccgcgtcgtgtggctgccatg
tcagtagctaaaagagtgtctgaagaaatggaagttagtttgggtgaagaagtagggtac
gctattcgatttgaagattgtacgaatgagaacacgatgatcaaatatatgacagatggt
attttgttacgtgaatctctgcgtgaatcagacttggatcactatagtgctgttatcatg
gacgaagctcacgaaagatctttaaatactgacgttttgtttgggttacttcgtgatgtt
gtttctcggaggcaggacttgaaattaattgtaacatctgccactatggacgctacaaaa
ttctcaaacttctttggtaatgttcccatctataccatccccggaagaacgtttcctgtt
gatgtcatgttcagtaaaaaccctgtggaggactatgttgatgcgtcagttaagcagacg
ttacaggtgcatcttcagggtctagaaggagatattctcatcttcatgccaggtcaggaa
gatattgaagtcacatgtgaattgttgggtgaaagactggatgaactagatgatgctcca
ccattagcaatcttaccaatttactctcaattacccagtgacctccaagctaagattttc
caaaaagctcctgacggtgttcgaaaatgtatcgtagctacgaatattgctgaaacgtct
ttgacagtagacggtataatgtttgttatcgacgcaggatattgcaaactgaaagtctat
aatcctaaaattggtatggacgctttacagatttatcctatttcccaagctaacgccaat
cagaggtctggtcgagctggtcgaacaggaccgggtcagtgttatcgattgtacacccat
agacaatacaaagatgaactactggcttgtactgtcccggagatacagaggaccaatcta
gcgaacgttgtgctgcttctcaaatctttaggtgtccaggatctgttgcagtttcatttt
atggacccaccgccccaggataacatacttaactccatgtatcagttgtggattctcgga
gctctggacaacactggttctctaacacccatgggaagacagatggtcgaattccctctc
gatccagctctgtctaaaatgatgattgtgtctttagacatggagtgcagtgcggaaatg
ttaaccatcgtgtcaatgttgtccgtccctacaatattttacagacctaagggtcgggag
gaggactctgatggtgctcgtgaaaagttccaagttcccgaaagcgatcatttaacgtat
ctcaatgtttatcagcagtggaagcgtaacagttattcatcaagttggtgtggtgaacat
tttatacacatcaaagccatgaggaaagttcgcgaagttcgtcaacaactgaaggaaatc
atggaccagcagaaaatggacatgatatcttgcggcaacgagtgggacattattcgtaaa
gccatctgctcggcgtatttccaccaagctgcgcgattgaagggtttaggtgaatatgtg
aattgtcgaactggcatgccgtgtcatctgcatccaacgagcgctctattcggcatggga
tacaccccagattatatagtttaccacgaacttgtgatgacatccaaggaatacatgcaa
tgtgtaacagctgtcgatggtcaatggctggccgagttaggaccaatgttttacagtatt
aaggacgcgagtaaatctcgagtagaaagaaagagacaagaggtggatgaaatggttgag
atggaggaagagatgagaagagctgatgaacttataaaagctaggaaagaacaacaagag
aaggctgttctatctagtacacgcagtcagattgccacccccggacgccgggaacctggc
acacctggttccactcctagaagaactccggctaaatttggattatga
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