Patella vulgata (common limpet): 126818450
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Entry
126818450 CDS
T09576
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126818450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvul03019
]
126818450
03041 Spliceosome [BR:
pvul03041
]
126818450
03009 Ribosome biogenesis [BR:
pvul03009
]
126818450
03016 Transfer RNA biogenesis [BR:
pvul03016
]
126818450
Enzymes [BR:
pvul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126818450
Messenger RNA biogenesis [BR:
pvul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126818450
Spliceosome [BR:
pvul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126818450
Complex C
U4/U6.U5 tri-SnRNP related factors
126818450
Ribosome biogenesis [BR:
pvul03009
]
Eukaryotic type
Pre-60S particles
Helicases
126818450
Transfer RNA biogenesis [BR:
pvul03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126818450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
FtsK_gamma
Motif
Other DBs
NCBI-GeneID:
126818450
NCBI-ProteinID:
XP_050401824
LinkDB
All DBs
Position
4:55945237..55963221
Genome browser
AA seq
1020 aa
AA seq
DB search
MADAFGDGLFDVFEESKEASTSKTQKKLNVDEKRAENLLKKLVTKRPKEEEEDEMETKKI
KKFTDEISSLDSTPRIQIHTVETVEACLHEVAIPPDAEFTPLKPPPDKPAKEYPFILDPF
QKEAILCLENYQSVLVSAHTSAGKTVVAVYAIAMSLRERQRVIYTTPIKALSNQKYRELF
EEFQDVGLMTGDVTINPTASVLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKERG
VVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPIPLQHYLFPA
GGDGLHLVVDETGEFREENFNTAMSVLKDAGDAAKGDQKGRKGGSKAHESSCFKIVKMIM
ERNFAPVVVFSFSRKECEAYGMSMAKLDFNTDEEKTLVDEVFNNAIDALSDEDKKLPQVE
HVLPLLKKGVGIHHSGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVLFTSAR
KFDGKDFRWVTSGEYIQMSGRAGRRGLDERGIVILMIDEKMSPAVGKNLLRGLPDPLNSA
FHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLCEKLKKKEKECNSLVIENEDN
VAAYYKIRQQLEHLSVELIHFIRQPVYLLPFLQPGRLLKVKNNEDEYGWGVVVNFSKKKA
DTSSDKRENTVYIVDVLLYITKDSVKSRDITQVKPCPPTEKGEMQVVPIMIHLIEAISAL
RVYISNDLRPLDNRMRVFKSLVEVKKRFPDGIPLLDPIEDMGIKDKALTEIIKKIEAFEH
RLYSHPLHKDPNLKQLYNEYDVKTKISNEMKILKSELKKKRSLLQMDELKKRKRVLRRMG
YATASDVIEIKGRVACEISSGDELLMTELLFNGVFNDLTPQQACSLISCFVFQENANQLT
KLSEELSGPLRIMQDTARRIARISKEAKLEIDEEVYVDGFKPHMMDVVFAWCNGVSFGQV
CKMTDCFEGSIIRCMRRLEETLRQLCQAAKAIGNTELENKFAEGIHKLKRDIVFAASLYL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcgtttggagatggattatttgacgtatttgaggagagtaaagaagccagt
acaagcaaaacgcagaaaaaattaaatgttgacgaaaaaagggcagagaatctacttaaa
aaacttgttacaaaacgcccaaaagaagaggaagaagatgaaatggagaccaaaaaaatt
aaaaaatttactgatgaaataagctccttagattccacacctcgcatacaaattcataca
gttgaaactgtagaagcttgtttacatgaggttgccattccaccagatgctgaatttaca
ccgttaaaaccaccaccggacaaaccagcaaaagaatatccttttattcttgatccattt
caaaaagaagctattttatgtttagagaattatcaatctgtattagtttcagctcataca
tcagctggtaaaactgttgttgctgtgtatgctatagcaatgtctttacgagaaagacag
agagttatctacacaacacctattaaagctttaagtaatcagaaatacagagagttattt
gaagaatttcaagatgttggtttaatgactggtgatgtgactattaatcctacagctagt
gtattagtcatgacgacagagattttaagaagtatgttgtatagaggatcagagataatg
agagaagtagcgtgggttgtgtttgatgaaatacattatatgagagacaaagaacgtgga
gtagtatgggaagaaactattattttactaccagataatgtacattatgtatttttatct
gctactatacctaatgcaagacagtttgctgaatggatatgtcacttacataaacagcca
tgtcatgttgtttatactgattatagacctattccattacaacattatctgtttcctgct
ggtggtgatggtttacatttagttgttgatgaaacgggtgagtttagagaagagaatttt
aatacagctatgtccgtattaaaggatgctggtgatgcagctaaaggtgatcagaaaggt
agaaaaggtggaagtaaagctcatgagtcaagttgttttaagatagtgaagatgataatg
gagagaaactttgctcctgttgttgtgtttagttttagtcgtaaagaatgtgaagcatat
ggtatgagtatggctaaactagattttaatacagatgaagaaaagacgttagttgatgaa
gtatttaataatgctatagatgctttatctgatgaagataaaaaactaccacaggttgaa
catgttttaccattgttaaagaaaggcgttggtatacatcattctggtttattacctatt
ctaaaagaaacaatcgaaattctcttttctgaaggtttgattaaggctttatttgctact
gaaacatttgctatgggtttgaacatgcctgccagaactgtgttatttactagtgctcgg
aaatttgatggtaaagatttccgttgggtaacatctggtgaatatattcaaatgagtggt
agagctggtcgaagaggtttagatgaacgaggaattgttattttgatgattgatgaaaaa
atgagtcctgcagttggtaaaaatttattacggggtctgccagatcccctcaacagtgct
ttccatttaacttacaatatggtgttaaatctattgagagtagaagaaattaatccagaa
tatatgttagaaagatcattctatcagttccagaattatgcggctataccagatctctgt
gaaaagttaaagaaaaaagaaaaagaatgtaatagtttagttatagagaatgaagataat
gtagcagcatattataaaatacgccaacagttagaacatcttagtgtagaattaatacac
tttatacgtcaacctgtatatcttctacctttcttacaaccaggtagattattaaaggtg
aaaaataatgaagatgaatatggttggggtgttgtggttaatttctccaagaagaaagca
gatacgtcatctgataaaagagaaaatactgtatatatagttgatgtgttactatatata
actaaagatagtgttaaaagtagagatataactcaagttaaaccatgcccacctacagaa
aaaggtgaaatgcaggttgtaccaataatgattcatttgatagaagccattagtgcatta
agagtgtatatatcaaatgatttacgaccactagataacaggatgagagtcttcaaatct
ttagtagaagtaaagaagagatttcctgatggtataccgctattagatcctatagaagat
atgggtattaaagataaagctctaacagaaataatcaagaaaattgaagcatttgaacat
cgtttatatagtcatccattacataaagatcccaatttaaaacaactttataatgaatat
gatgttaaaactaagatttccaatgaaatgaaaattttaaagagtgaattaaagaagaaa
agatctctgttacaaatggatgaattaaagaagagaaaacgagtattaagaagaatggga
tatgcaacagcttcagatgttatagaaatcaagggtagagtcgcgtgtgaaatcagcagt
ggtgatgagttgttaatgaccgagttattatttaatggtgtatttaatgatttaacacct
caacaggcctgttctctcatcagttgttttgtgtttcaagaaaatgccaaccagttaacg
aaattatcagaagaattgtcaggtccattaagaataatgcaggatacagctagaagaata
gctagaataagtaaagaagcaaagttagaaatagatgaagaagtttatgttgatggattt
aaacctcatatgatggatgttgtatttgcctggtgtaatggagtatcatttggtcaagtt
tgtaaaatgacagactgttttgaaggaagtattattagatgtatgagaagattagaagaa
acattacgccaactatgtcaggctgctaaagctattggtaatacagaattagaaaataaa
tttgctgaaggcattcataaattaaagagagatattgtgtttgctgctagtttatactta
tag
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