| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts 1
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| KO |
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| Organism |
pvul Patella vulgata (common limpet)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pvul00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126819638
03015 mRNA surveillance pathway
126819638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:pvul03019]
126819638
Enzymes [BR:pvul01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126819638
5.6.2.5 RNA 5'-3' helicase
126819638
Messenger RNA biogenesis [BR:pvul03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126819638
mRNA cycle factors
Common to processing body (P body) and stress granule
126819638
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
4:28000123..28147915
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| AA seq |
1103 aa
MSVDTYGPNSQTLTFLDTEETELLGADTQGSDFDFTDFTLPSQTLSQSQQSQLDGGPSQV
NGVDIPTQNGLESGVMSITQGVGELTFEEEEEEQFFMKDLPKHACSYCGIHDPSCVVFCN
ASKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIP
AKADSVVVLLCRHPCATLSNLKDMNWDPTQWLPLIQDRQFLSWLVKVPTDQDQLRARQIT
AQQINKLEELWKENPEAKLEDLEKPGIDEEPQQVLLRYDDAYQYQNIFGPLVKLEADYDR
KLKESQTQDNIQVRWDVGLNKKKIAHFQLPKANDEMKLMHGDELRIRYIGDQHKTWSGVG
HVIKIPDNFTDEIAIELKSSVGVPTECTQHFVVDFVWKSTSFDRMQAALKTFAVDETSVW
GYIYHKLLGHEVEDVVLKCQLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLVKQISGPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSF
LALHNQIKNMESVAELQKLQQLKDVTGELSSADEKRYRALKKQCEKELLQAADVICCTCV
GTGDPRLAKMQFRCVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKAARA
GLSQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAGERTIRALDFP
WPTPDKPMFFYCTSGQEEISSSGTSYLNRTEAANVEKLATRFLRGGIKPAQIGIITPYEG
QRAYLVQYMQYNGSLNKKLYQEIEVASVDAFQGREKDFILLSCVRSNEHQGIGFLNDPRR
LNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESLIQFSKPRK
LVNTTNPGGRFMSNTMFDAREVLIPGSAYDRTNVGYREPVVRTHDQLSFIGPERAYSRAN
MNLPVPVNMFLPPVPQPYQQQPLQPGMAGRGGKVRRQKPPRYSNMQQTGMSQFSLPGMSQ
SQASQDASQPFSQGPLTQGNMSMSQQFAVGQPGLSGLSQPELSQDSYLADDFKSQADVML
SQDSTYQGDRMYYTSQLSQGPFN |
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| NT seq |
3312 nt +upstreamnt +downstreamnt
atgagcgtggacacgtacggaccgaattcgcaaaccctcacgtttttggacaccgaggaa
accgaacttcttggagctgacacgcaaggttcagattttgattttactgactttacacta
ccctcacaaaccctgtcgcagagtcagcaatctcagctagatggtggtccaagtcaggtc
aatggtgtcgatattccaactcaaaatggattggaatctggtgttatgtcaatcacgcaa
ggagtgggagagcttacatttgaggaagaggaagaagaacaattctttatgaaagattta
cctaaacatgcatgctcatattgtggtattcatgatccatcatgtgttgtattttgtaat
gcctcaaagaaatggttttgtaatggacgaggaaacacttctggcagtcacatcatcaac
catcttgttagagctaaagctaaagaagtaacgttacataaagatggaccactgggagaa
acagtattagaatgttataactgtggttgtagaaatgtgtttttactgggttttatacca
gccaaagctgattctgttgttgtattattgtgtcgtcatccatgtgctacactaagtaac
ctaaaagatatgaattgggatcccacacagtggctaccattgattcaagatcgtcaattt
ttatcctggttggtgaaagtacctacagatcaagatcagctaagagctagacaaataaca
gctcagcagattaataagctggaagaattatggaaggaaaacccagaagctaaactggaa
gatctagaaaaaccaggaatagatgaagagcctcaacaggttttactaagatatgatgac
gcctatcaatatcagaatatatttggaccactagtaaaattagaagctgattatgataga
aagttgaaagaatcacagacacaagataatatacaagtaagatgggatgtgggtttaaac
aagaagaagattgctcactttcaactacctaaggcaaatgatgagatgaagttaatgcat
ggtgatgaattaagaatacgatatattggtgatcaacataaaacatggtctggtgttggt
catgttattaaaatacctgataattttacagatgaaatagctatagaattaaagagtagt
gtaggagtacccacagaatgtacacagcattttgttgtggattttgtgtggaaatcaact
tcatttgacaggatgcaagcagcattaaagacatttgctgtagatgaaacatctgtgtgg
gggtatatttatcataagttattaggacatgaagtagaagatgttgtattgaaatgtcaa
ctaccaaaacgcttcagtgctccgggattaccggaactcaatcactcacaagtttatgct
gttaaaacagttcttcaacgacctcttagtcttattcaaggcccacctggaactggtaaa
actgtcacatctgcaactattgtatatcatctagtaaaacagatcagtggacctgtactt
gtgtgtgctccatcaaacatcgctgttgatcaacttacagaaaaaatacatcgaactggt
cttaaggttgtccgtgtttgtgccaaaagtcgagaagccattgactcaccagtctctttc
ctggctctgcataatcaaattaaaaatatggaaagtgtggctgaattacagaagctacaa
cagttaaaagatgtaactggtgaattatcatcagcagatgaaaaacgttatagagccttg
aaaaagcaatgtgaaaaggagcttttacaggcagctgatgttatttgttgtacatgtgtt
ggtactggtgatcccagattggctaagatgcagtttcgatgtgtcttaatagatgaaagt
acacaagcaacagaaccagaatgtatgataccagttattttgggatgtagacagcttatt
ctggttggagatcattgtcagttaggtccagttgttatgtgtaagaaggcagctagagca
ggactgtcgcagtctctatttgaacgtttggttgtactgggtattcgacctattagatta
caagtacaatatcgtatgcacccttcattgagtgcttttccttccaatatattctacgaa
ggttcattacagaatggtgtcacagcaggtgaacgaactatccgagctttagattttccc
tggcctacacctgataaacctatgtttttctactgtacgtctggtcaagaagaaatatct
agttccggaacatcttatctcaacagaactgaggcagctaatgtagagaaattagctaca
agatttttacgtggaggtattaaaccagcacagataggtataataacaccatatgaaggg
cagagagcctatcttgtccagtatatgcagtataatggatccttgaataaaaaactgtat
caggaaattgaagtggctagtgtggatgcttttcaaggaagagaaaaagatttcatattg
ttgtcatgtgttagatctaatgaacatcaaggcattggatttttaaatgatccaagacgt
ttaaatgtagctttgacaagagccaagtatggtataattattgttggaaatccgaaagtt
ttgtctaagcaaccattgtggaatcatttgttgacatattataaagaacagaaatgtctg
gtagaaggaccattaaataatctaaaggagagtttgattcagtttagtaaacccagaaaa
ctagtcaacactactaatcctggtggccgattcatgagtaataccatgtttgatgctaga
gaagttttgattcctggtagtgcttatgacagaacaaatgttggctatcgcgaacctgtt
gttagaacacatgatcagttgagttttattggaccagagagagcttattctagagctaat
atgaatttaccagtaccagttaatatgtttttaccacctgtaccacaaccttatcagcaa
cagcctttacaaccaggtatggctggtcgaggaggtaaagtgcgtcgccagaaaccacct
aggtacagcaacatgcaacagactggaatgtctcagtttagtttacctggaatgtcccaa
agtcaggctagtcaggatgcatcacagcctttctctcaagggccattgactcaaggtaac
atgtcaatgagtcagcaatttgcagtgggtcaacctgggttatcaggcttgtctcagcca
gagctatctcaggacagttatctggctgatgatttcaaatcacaagctgatgtgatgtta
tcacaagattctacataccaaggggaccgtatgtattatacgtcccaactctcccagggc
cctttcaactag |
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