Patella vulgata (common limpet): 126819638
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Entry
126819638 CDS
T09576
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03013
Nucleocytoplasmic transport
pvul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126819638
03015 mRNA surveillance pathway
126819638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvul03019
]
126819638
Enzymes [BR:
pvul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126819638
5.6.2.5 RNA 5'-3' helicase
126819638
Messenger RNA biogenesis [BR:
pvul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126819638
mRNA cycle factors
Common to processing body (P body) and stress granule
126819638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
AAA_16
NAT10_TcmA_helicase
nSTAND3
ATPase
SRP54
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
126819638
NCBI-ProteinID:
XP_050403734
LinkDB
All DBs
Position
4:28000123..28147915
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AA seq
1103 aa
AA seq
DB search
MSVDTYGPNSQTLTFLDTEETELLGADTQGSDFDFTDFTLPSQTLSQSQQSQLDGGPSQV
NGVDIPTQNGLESGVMSITQGVGELTFEEEEEEQFFMKDLPKHACSYCGIHDPSCVVFCN
ASKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIP
AKADSVVVLLCRHPCATLSNLKDMNWDPTQWLPLIQDRQFLSWLVKVPTDQDQLRARQIT
AQQINKLEELWKENPEAKLEDLEKPGIDEEPQQVLLRYDDAYQYQNIFGPLVKLEADYDR
KLKESQTQDNIQVRWDVGLNKKKIAHFQLPKANDEMKLMHGDELRIRYIGDQHKTWSGVG
HVIKIPDNFTDEIAIELKSSVGVPTECTQHFVVDFVWKSTSFDRMQAALKTFAVDETSVW
GYIYHKLLGHEVEDVVLKCQLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLVKQISGPVLVCAPSNIAVDQLTEKIHRTGLKVVRVCAKSREAIDSPVSF
LALHNQIKNMESVAELQKLQQLKDVTGELSSADEKRYRALKKQCEKELLQAADVICCTCV
GTGDPRLAKMQFRCVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKAARA
GLSQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAGERTIRALDFP
WPTPDKPMFFYCTSGQEEISSSGTSYLNRTEAANVEKLATRFLRGGIKPAQIGIITPYEG
QRAYLVQYMQYNGSLNKKLYQEIEVASVDAFQGREKDFILLSCVRSNEHQGIGFLNDPRR
LNVALTRAKYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLNNLKESLIQFSKPRK
LVNTTNPGGRFMSNTMFDAREVLIPGSAYDRTNVGYREPVVRTHDQLSFIGPERAYSRAN
MNLPVPVNMFLPPVPQPYQQQPLQPGMAGRGGKVRRQKPPRYSNMQQTGMSQFSLPGMSQ
SQASQDASQPFSQGPLTQGNMSMSQQFAVGQPGLSGLSQPELSQDSYLADDFKSQADVML
SQDSTYQGDRMYYTSQLSQGPFN
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacacgtacggaccgaattcgcaaaccctcacgtttttggacaccgaggaa
accgaacttcttggagctgacacgcaaggttcagattttgattttactgactttacacta
ccctcacaaaccctgtcgcagagtcagcaatctcagctagatggtggtccaagtcaggtc
aatggtgtcgatattccaactcaaaatggattggaatctggtgttatgtcaatcacgcaa
ggagtgggagagcttacatttgaggaagaggaagaagaacaattctttatgaaagattta
cctaaacatgcatgctcatattgtggtattcatgatccatcatgtgttgtattttgtaat
gcctcaaagaaatggttttgtaatggacgaggaaacacttctggcagtcacatcatcaac
catcttgttagagctaaagctaaagaagtaacgttacataaagatggaccactgggagaa
acagtattagaatgttataactgtggttgtagaaatgtgtttttactgggttttatacca
gccaaagctgattctgttgttgtattattgtgtcgtcatccatgtgctacactaagtaac
ctaaaagatatgaattgggatcccacacagtggctaccattgattcaagatcgtcaattt
ttatcctggttggtgaaagtacctacagatcaagatcagctaagagctagacaaataaca
gctcagcagattaataagctggaagaattatggaaggaaaacccagaagctaaactggaa
gatctagaaaaaccaggaatagatgaagagcctcaacaggttttactaagatatgatgac
gcctatcaatatcagaatatatttggaccactagtaaaattagaagctgattatgataga
aagttgaaagaatcacagacacaagataatatacaagtaagatgggatgtgggtttaaac
aagaagaagattgctcactttcaactacctaaggcaaatgatgagatgaagttaatgcat
ggtgatgaattaagaatacgatatattggtgatcaacataaaacatggtctggtgttggt
catgttattaaaatacctgataattttacagatgaaatagctatagaattaaagagtagt
gtaggagtacccacagaatgtacacagcattttgttgtggattttgtgtggaaatcaact
tcatttgacaggatgcaagcagcattaaagacatttgctgtagatgaaacatctgtgtgg
gggtatatttatcataagttattaggacatgaagtagaagatgttgtattgaaatgtcaa
ctaccaaaacgcttcagtgctccgggattaccggaactcaatcactcacaagtttatgct
gttaaaacagttcttcaacgacctcttagtcttattcaaggcccacctggaactggtaaa
actgtcacatctgcaactattgtatatcatctagtaaaacagatcagtggacctgtactt
gtgtgtgctccatcaaacatcgctgttgatcaacttacagaaaaaatacatcgaactggt
cttaaggttgtccgtgtttgtgccaaaagtcgagaagccattgactcaccagtctctttc
ctggctctgcataatcaaattaaaaatatggaaagtgtggctgaattacagaagctacaa
cagttaaaagatgtaactggtgaattatcatcagcagatgaaaaacgttatagagccttg
aaaaagcaatgtgaaaaggagcttttacaggcagctgatgttatttgttgtacatgtgtt
ggtactggtgatcccagattggctaagatgcagtttcgatgtgtcttaatagatgaaagt
acacaagcaacagaaccagaatgtatgataccagttattttgggatgtagacagcttatt
ctggttggagatcattgtcagttaggtccagttgttatgtgtaagaaggcagctagagca
ggactgtcgcagtctctatttgaacgtttggttgtactgggtattcgacctattagatta
caagtacaatatcgtatgcacccttcattgagtgcttttccttccaatatattctacgaa
ggttcattacagaatggtgtcacagcaggtgaacgaactatccgagctttagattttccc
tggcctacacctgataaacctatgtttttctactgtacgtctggtcaagaagaaatatct
agttccggaacatcttatctcaacagaactgaggcagctaatgtagagaaattagctaca
agatttttacgtggaggtattaaaccagcacagataggtataataacaccatatgaaggg
cagagagcctatcttgtccagtatatgcagtataatggatccttgaataaaaaactgtat
caggaaattgaagtggctagtgtggatgcttttcaaggaagagaaaaagatttcatattg
ttgtcatgtgttagatctaatgaacatcaaggcattggatttttaaatgatccaagacgt
ttaaatgtagctttgacaagagccaagtatggtataattattgttggaaatccgaaagtt
ttgtctaagcaaccattgtggaatcatttgttgacatattataaagaacagaaatgtctg
gtagaaggaccattaaataatctaaaggagagtttgattcagtttagtaaacccagaaaa
ctagtcaacactactaatcctggtggccgattcatgagtaataccatgtttgatgctaga
gaagttttgattcctggtagtgcttatgacagaacaaatgttggctatcgcgaacctgtt
gttagaacacatgatcagttgagttttattggaccagagagagcttattctagagctaat
atgaatttaccagtaccagttaatatgtttttaccacctgtaccacaaccttatcagcaa
cagcctttacaaccaggtatggctggtcgaggaggtaaagtgcgtcgccagaaaccacct
aggtacagcaacatgcaacagactggaatgtctcagtttagtttacctggaatgtcccaa
agtcaggctagtcaggatgcatcacagcctttctctcaagggccattgactcaaggtaac
atgtcaatgagtcagcaatttgcagtgggtcaacctgggttatcaggcttgtctcagcca
gagctatctcaggacagttatctggctgatgatttcaaatcacaagctgatgtgatgtta
tcacaagattctacataccaaggggaccgtatgtattatacgtcccaactctcccagggc
cctttcaactag
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