Patella vulgata (common limpet): 126822193
Help
Entry
126822193 CDS
T09576
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03022
Basal transcription factors
pvul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126822193
09124 Replication and repair
03420 Nucleotide excision repair
126822193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvul03021
]
126822193
03036 Chromosome and associated proteins [BR:
pvul03036
]
126822193
03400 DNA repair and recombination proteins [BR:
pvul03400
]
126822193
Enzymes [BR:
pvul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126822193
Transcription machinery [BR:
pvul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
126822193
Chromosome and associated proteins [BR:
pvul03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
126822193
DNA repair and recombination proteins [BR:
pvul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
126822193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
DEAD
ResIII
PspAA
nSTAND3
SesA
SNF2-rel_dom
UvrD-helicase
Arc_MA
Motif
Other DBs
NCBI-GeneID:
126822193
NCBI-ProteinID:
XP_055956852
LinkDB
All DBs
Position
5:794364..812357
Genome browser
AA seq
549 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYLYMLELKKSIDAQGHCALEMPSGTGKTVSLLSLVVAYM
KANPLEVTKLIYCSRTVPELEKVVEELRNLMAFYEKETGQPQEILGLALSSRKNLCVHPE
VSQNRDGKTVDGQCHQLTASHIRQRYKHDPSIPICDFYEEFDAHGRDTPLPAGIYSLDDL
KEYGRLKNFCPYFLARYALLHANVIIYSYYYLLDPKIAEQVSKELAKKSVVVFDEAHNID
NVCIESMSVKMSKRTLERCSANIETLDRHIKRVKDGDEKKLREEYHRMVEGLREANEQRE
TDVILANPVLPDEILQEAVPGTIRNAEHFVSFMKRFLEYMKSRLRVQHVVSESPPSFLKD
CAQKICIDRKPLRFCAERLASLMRTLELTDLHDFSALTLLVNFATLVSTYAKGFMLIIEP
FDDRTPTISNPVLYFSCMDASIAIKPVFDRFQTVVITSGTLSPLDMYPKILDFRPVTMAT
FTMTLARICICPMIVSKGNDQVAMSSKFEVREDVAVIRNYGTLLVDMCGTVPDGIVCFFT
SYVYMVRIF
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgaatattgatggtttattggtttattttccctatgattatatatatccagaa
caatatctttatatgctggagttgaagaaatctattgatgctcagggtcattgtgctctg
gagatgccttcaggaacaggtaaaacggtctcactgctctccctagttgtcgcttacatg
aaggctaatccattggaagtcactaaacttatttattgttcaagaacagtaccagaactc
gaaaaggttgtagaagaattaaggaatttgatggcattttatgagaaagaaactgggcag
ccacaagaaatattaggactagctttaagttcaagaaagaatttgtgtgtacatcccgag
gttagtcagaatagagatggtaaaactgtagatggacaatgtcatcaactaacagcttca
cacattcgacaacgatataaacatgatccatctatacccatctgtgatttttacgaggaa
tttgatgctcatggtagagacacgccattacctgctggtatttatagtttagatgatctt
aaagaatatggtagattaaagaatttctgtccttattttcttgctagatatgccctcctc
catgctaatgttataatatatagttattattatctacttgatcctaaaatcgctgaacag
gtgtcaaaagaattagcgaagaaatctgtggttgtatttgatgaggcacataatatagat
aatgtgtgtattgagtcaatgagtgttaaaatgtctaaaagaactctagaaagatgttca
gcaaatattgaaactttagacagacatataaaaagagttaaagatggtgatgagaagaag
ttaagagaagaatatcatagaatggttgaaggtttacgtgaagctaacgaacaaagagaa
acggatgttatacttgctaatccagttttaccagatgaaatcctacaagaggctgtccca
ggcaccatccgaaatgcagaacattttgtcagtttcatgaagcgatttttagaatatatg
aaatctagactacgggttcaacatgtggtttctgaatcacctccgtcatttctgaaagac
tgcgctcaaaaaatatgtatagatagaaaaccattgagattttgtgcggagagattagcg
tcgttgatgagaacattagaactaacagacttacatgatttttcagctctgactttactc
gttaactttgctacattagtcagtacatacgctaaaggttttatgttaataattgaaccg
tttgatgatagaacaccaaccatatcaaatcctgtgctatattttagttgtatggatgct
tctattgccattaaacctgtctttgatagatttcaaacagttgttattacatctggtact
ctttctccattagatatgtatcccaagattcttgatttccgtccagttactatggcaacc
tttacaatgactctagccagaatttgtatatgtcctatgattgttagtaaaggtaatgat
caagttgctatgtcatcaaaatttgaagttcgagaagatgtagctgtgataagaaactac
ggaactttactggtagatatgtgtggaacagtacccgatggaattgtttgtttcttcaca
agttacgtttatatggttcgtatattttaa
DBGET
integrated database retrieval system
