KEGG   Patella vulgata (common limpet): 126823407
Entry
126823407         CDS       T09576                                 
Name
(RefSeq) replication factor C subunit 5 isoform X2
  KO
K10756  replication factor C subunit 3/5
Organism
pvul  Patella vulgata (common limpet)
Pathway
pvul03030  DNA replication
pvul03410  Base excision repair
pvul03420  Nucleotide excision repair
pvul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pvul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    126823407
   03410 Base excision repair
    126823407
   03420 Nucleotide excision repair
    126823407
   03430 Mismatch repair
    126823407
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pvul03032]
    126823407
   03036 Chromosome and associated proteins [BR:pvul03036]
    126823407
   03400 DNA repair and recombination proteins [BR:pvul03400]
    126823407
DNA replication proteins [BR:pvul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    126823407
  DNA Replication Termination Factors
   ELG1-RFC complex
    126823407
Chromosome and associated proteins [BR:pvul03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    126823407
DNA repair and recombination proteins [BR:pvul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     126823407
  Check point factors
   HRAD17(Rad24)-RFC complex
    126823407
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_11 RuvB_N AAA_22 RCF1-5-like_lid AAA_24 AAA_assoc_2 AAA_16 AAA_14 AAA_5 ResIII DUF815 DEAD AAA_7 PhoH TIP49 AAA_30 Mg_chelatase AAA_19 Thioredoxin_6 AAA_2 ATPase_2 bpMoxR AAA_28 AAA_3 RNA_helicase
Other DBs
NCBI-GeneID: 126823407
NCBI-ProteinID: XP_050408192
LinkDB
Position
6:complement(21361909..21371813)
AA seq 332 aa
MSIKDNISNPNLPWVEKYRPKQLDDLISHADIINTISKFVKEDRLPHLLFYGPPGTGKTS
TILAVAKQIYSPKEFNSMVLELNASDDRGIGIVRGQVLSFASTRTIFKSGFKIVILDEAD
AMTNDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLTTDQMVPRLEY
VTGQEAIKVSSDGMKACVTLASGDMRKALNILQSTSMAFDEVNEDNVYTCVGHPLRRDIE
NIVNWILNENFTTAYKNLTEVKTAKGLALQDVLTEIHQYVHRIDLPVKVKMHLLEKMADI
EYRLALGTSEKIQMSSMIAAFQAARDLITQDA
NT seq 999 nt   +upstreamnt  +downstreamnt
atgtctatcaaagataacatatcgaatccaaatcttccatgggtagaaaaatacagacca
aaacagttagatgatctaatatctcatgctgatattattaatacaattagtaaatttgta
aaagaagatcgacttccacatctgttattttatgggcctccaggaactggcaaaacatct
accattttagctgtagccaaacaaatttattcaccaaaagaatttaactccatggtgttg
gagttaaatgcatcagatgatcgaggtattggcattgtaagaggacaagttctaagcttt
gctagtacaagaaccatatttaagtctggttttaagattgttatattagatgaagctgat
gctatgaccaatgatgcacaaaatgctttaagaagagtgatagaaaaatttacggagaat
acaagattttgtataatctgtaattatttatcaaagataataccagctctacagtcgaga
tgtacacgattccgctttggtccgcttacaacagatcagatggtacctagattagaatat
gttacaggtcaagaagcaataaaagtatcatctgatggaatgaaagcatgtgtgacttta
gcatcaggtgacatgagaaaagcattaaatatattacagagtacgtctatggcatttgat
gaagtaaatgaagataatgtatatacctgtgtaggacatccattaagacgtgatattgaa
aatatagtcaactggatacttaatgaaaattttacaacagcttataaaaatttaacagaa
gttaaaacagcaaagggtttagcgttacaagatgttcttacagaaatacatcaatatgta
catagaattgatctacctgtgaaagttaaaatgcatctgcttgaaaaaatggcggatata
gagtaccgtctagccttaggtaccagtgaaaaaatacagatgtcttctatgatagcagca
tttcaagcagcaagagatctcataacacaagatgcttaa

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