Patella vulgata (common limpet): 126832525
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Entry
126832525 CDS
T09576
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pvul
Patella vulgata (common limpet)
Pathway
pvul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126832525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvul03041
]
126832525
Enzymes [BR:
pvul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126832525
Spliceosome [BR:
pvul03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
126832525
Complex B
126832525
Complex C
U2 SnRNP specific factors
126832525
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
126832525
NCBI-ProteinID:
XP_050419298
LinkDB
All DBs
Position
9:45682202..45720615
Genome browser
AA seq
751 aa
AA seq
DB search
MNSKTDSKKRGIGFGGFAIKKKEEPQQLAPSTNFSSLSGMGGSKANRLNPGRSLSYSLNI
GKKRVKCEDDYFDDEDEDGPPVAHDDDSGEEFTPAGMDGTKNDDSDSDDPLDAFMEGVEK
ELTEAERQAFEEDIKEEKEKGVRNDIDDEDVQEAYFRFMEENPNVGVIQDDDDDYDYDSD
GNVIPRERSKIIDPLPPIDHSEYSYQPFERNFYNEHQEIKALTNEQVNELRNKLSIKVSG
LEPSKPVCSFGHFGFDELLLAAIRKSEYTKPTPIQAQAIPVALSGRDIIGIAKTGSGKTA
AFLWPMLIHIMDQKELEPGEGPIGLILAPTRELSQQIYQEAKKFGKIYNINVVCAYGGGS
MWEQTKACQEGAEIIVATPGRLIDLIKKKSTNLERVTYLVFDEADRMFDMGFEPQVRSIA
NHVRPTRQTLLFSATFRKRIEKLARDILGDPVRIVQGEIGEANEDVTQYIEVLPPGPAKW
SWLVKRIVGFTTDGSVLIFVTRKSNSEELAANLRARDLSLGLLHGDISQSERNEIISSFK
KKEFPILVATDVAARGLDIPHIKTVVNYDIARDIDTHTHRIGRTGRAGEKGTAYTLITNK
DKEFAPLLVRNLEGANQFVPPALLDLAVQCPWFNKNRYKKERGKSVMRGGGKRLGFKERP
GLGSESSTSSQDSSSLTTYRPSASMGRSDRLSAMKAALTAQFKSNFVTSTTDGVPSLMGG
GLGQKATFHEPLNPQTSNSSDSKRRKKSRWD
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtaaaactgacagtaagaaacgaggaattggttttggtggatttgctattaaa
aagaaagaagaaccacaacaattggcaccatccactaatttcagttctctctctggaatg
ggaggatcaaaggccaacagactgaatccaggtcgaagtctgagttattctctaaatatt
ggaaagaaacgagtgaaatgtgaagatgattattttgatgatgaggatgaagacggtcca
ccagttgctcatgatgatgattcaggtgaagaatttacaccagcaggaatggacggaacg
aaaaatgatgacagcgatagcgatgatccgttagatgcctttatggaaggagttgagaaa
gaattaacagaagctgaaagacaggcttttgaagaagatataaaagaagaaaaagaaaaa
ggggtacggaatgatattgatgatgaagacgttcaggaagcctactttcgctttatggaa
gagaatccgaacgttggagtgatacaagatgatgatgatgactatgattatgatagtgat
ggaaatgttattccacgtgaacgatccaagataattgatccattaccacccatagatcat
tctgaatattcttaccaaccgtttgaaagaaatttctacaatgaacatcaggagattaag
gctttaaccaatgaacaggtcaatgaattacgcaataaactctcaatcaaggtgtcagga
ttagaaccatcgaaacctgtctgtagttttggacattttggatttgatgaattgttactg
gctgctatacgtaaatctgaatatacaaaacccacacctatacaagctcaggcgattcct
gttgcattaagtggcagagatataatcggtatcgctaaaacaggaagtggtaaaactgct
gcatttttgtggccaatgttgattcatattatggaccagaaagaactggaaccaggtgaa
ggtccgattgggttaatactggctccaactagagaactttcccaacagatatatcaagaa
gcaaagaagtttggtaaaatctataatattaatgtagtctgtgcttatggtggcggaagt
atgtgggagcagacgaaggcatgtcaggaaggagcagaaataattgtagccactccaggc
cgattgattgatctaattaagaagaaatctactaatttagagagagttacctaccttgta
tttgacgaagcagatcgaatgtttgatatgggttttgaaccacaagtacgatctatagct
aatcatgttagacctactagacaaacgttattattcagtgccacgtttagaaagagaata
gagaaattagctcgagatatattaggtgatcctgttagaattgtacagggagaaatagga
gaggcaaatgaagatgtgacacagtatattgaagttcttccaccaggacctgccaaatgg
tcgtggttggttaaacgtattgtaggttttactacagatggaagtgttttaatatttgta
accagaaaatccaacagtgaagaattagctgctaatcttagagcccgagatttatcattg
gggttattacatggtgatatcagtcagtccgagagaaatgaaatcatctcatcgtttaaa
aagaaagaatttcctattttagtagcaacagatgtagcagctcgaggtttagatatacca
catataaaaacagttgttaattacgatatagcaagagatattgatactcatacacataga
atcggtcgtactggacgagctggtgagaaaggaacagcatatacgttaataacaaataaa
gataaagagtttgctcccctgttagttcgtaatttagaaggagccaatcagtttgtgccc
cctgcattattagatctagctgtacagtgtccatggtttaacaagaatcgatataagaaa
gaacgaggtaaatctgtgatgagaggaggaggtaaacgtctcggttttaaagaacgacca
ggattaggttcagaaagtagtacaagtagtcaagattcatccagccttacaacatatcga
ccatctgcatctatgggaagaagtgacagattatcagccatgaaagctgctttaactgct
cagtttaaatctaactttgtgacgtctacgactgatggtgttccatctttgatgggcgga
ggacttggacaaaaggctacatttcacgaaccattgaatccccagacgtcaaattcatca
gattctaaacgaagaaaaaagagtcgatgggattaa
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