Patella vulgata (common limpet): 130010780
Help
Entry
130010780 CDS
T09576
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
pvul
Patella vulgata (common limpet)
Brite
KEGG Orthology (KO) [BR:
pvul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvul03019
]
130010780
Messenger RNA biogenesis [BR:
pvul03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
130010780
3'-5' decay
Other 3'-5' decay factors
130010780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
ResIII
AAA_19
zf-CCCH
zf-C2H2_jaz
PhoH
PAM2
TPR_19
UvrD-helicase
AAA_22
zf-CCCH_4
Helicase_RecD
zf_CCCH_4
zf-C2H2_4
AAA_5
zf-C2H2
MOV-10_Ig-like
T3SS_basalb_I
Motif
Other DBs
NCBI-GeneID:
130010780
NCBI-ProteinID:
XP_055954783
LinkDB
All DBs
Position
2:complement(37014450..37045585)
Genome browser
AA seq
1653 aa
AA seq
DB search
MDEGELKNDSEVTNHVEVKREGDNVNYGNINLSEVIGKISGYVKQRKHNEALAECNKGLA
LEPHHEKLLEKKIKILCNLGQLNEAYTLALHWNKRQPQHPVANKELKRLQDVLASLQDQD
SEEEPSVNSSKQDENHNAHDVSPSPSKNNRNVGDVKEDKLQTNSKKSTLVTSNANLSTIN
QHKSNGTSNGYECTFCDIKFKKKGELETHCRSDLHKKRLTSDEGQDWQFRPPPRGLSSEE
YCLCQRFSENGRCTFGEKCTEAHSEEELNEWKERFKYRREQLQKAREKLLHGNSYTEKLM
ERLMLSENPSAILVQSMDFVKLHINSDLKVNMVNKRCTNAWTFTVTSKMCLHNVCLLDDV
NKSYFCISSISVGPKKTQKYQNLENNCQEWTNQDVSVKAHGECVYRIKVVFKTDIFGTFR
QSIVFDFGLETVLRREMEVDSAPVLDTGKLTNDLLIVEAARWTEEKVQIVAYQPKLQHHS
ATEKDLLAKYTLPRAEKYSTIMQTLSKENYRLWMHEMLYLEEMTQYSLISGFNVKTSLQL
VNRFLLMPGALSTAKYAHNGELFAKMKLEDDLSEDSIGGRLILQNAQIAWIALCKSNSDK
PPKKVYEVVIEDKGKNFIFLRLSKNCVDELKLSCDEEVCVVIQFQLNRLPKVEMHAAVDK
LPTLDIVFPNLDTLQNIPWSPERQWNEELDCKLNVKQKEAILAITADTDIILPPLLLVGP
FGTGKTYTLAQAVKQVLKNDGSRILICTHSNSAADLYIKDFFHPCFEEGDEDIKPLRILY
QYRWVQTVSDVVLKYTLYDSSTGIFKHPTLEDLEKHRIIITTLSTARYISDINVSKEFFT
HIFIDEAAQALECETLIPLSMACESTRIVLAGDHMQLSPEVSAEFCRQQGFHMSFLERLH
EMYPRDHSCKVMLCENYRSHSAIVDFTSELFYENKLISSGKQKAHSKLYPLTFYAAKGEE
VQHPNSTGFYNTAEVYEVVERVEDLQKKWLVDEWGPLDEDAISVVTPYTDQVKRIRAELR
RKKLFRISVERVHNVQGKQYRAIILSTVRTQNTCRSDSREEDFIDYGFLSNVKLLNTAIT
RAQSLVMVVGDPVSLCLVGKCRKVWEYFLEICNKHGSLHGMTWTQLRAQLEGVEMTKTYT
LNPLAPEFIPNRLYHITRAASETIGMNLHSQVPMPPWQHMSPYSVPGYNPATYPMYQHMM
PYPYQGQYVPNMYNRVMYKQPSPPSTGGRASPKTTRSPSQLSPNSQKVRAEHNKDGIKNV
EGKPFHKPARSRMMGYVPPRVLMAPHYSHYYPVVPHYPGFYYLPEDPRVAVYPNQYVPHR
SMPHLIHHPGSERMYPQPLIGPNVAHKNNKSDTESDNSDARVSPSTNSGQQIQLLPNVKH
IPGHLFTCGPQSTKGDASENNNLERANKGQKQQKEERRLNVSDRPYSPANYGMDRSSTPG
LEELNTDLPPKPSPFSNNQGPFSQRKFHKSPGSDKQFAEKQETLKNRRSGKALHLRTGFS
TQFDDDLPTPTEVKDIVQMLEDFHEEKSPCPLPIVSASKEIKTQTKTSKEKGAAASSTPP
LKFQLNFTPPNNGEVQSSNNGGKLSYAGVLRKQPSNSLSPQPNADPLSGIEPQTPRTPSG
FITPGGDMNIDPFGILKSLNIEPAPRHRSFQHF
NT seq
4962 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggtgaattgaaaaatgacagtgaagtaactaaccatgttgaagtgaagagg
gagggggataatgtcaattatggaaacatcaacttaagtgaagtgataggaaaaatatct
ggttatgtaaaacaaaggaaacacaatgaggccttagctgaatgcaataaaggtttagct
ttggagcctcatcatgagaaacttttggagaaaaagattaaaatattatgcaatttgggc
cagttaaatgaagcctatactctggctttacactggaataagagacagcctcagcatcct
gttgccaacaaagaactaaaaaggctacaagatgttttggcatctctgcaagaccaggat
tctgaggaagaaccatctgttaattcctctaaacaagatgaaaaccataatgcacatgat
gtttccccttctccctccaaaaataatcgaaatgtaggcgatgtgaaagaagacaagtta
caaacaaactccaaaaagtcaactttggtgacttcaaatgcaaatctgtcaaccattaat
caacataaaagtaacggtacttctaatggatatgaatgtacattttgtgatataaaattc
aagaaaaaaggagaacttgagactcattgtcgaagtgatctgcataaaaaacgcctaaca
tcagatgaaggacaagactggcagtttaggcctccaccacgtggactatcaagtgaagag
tattgtctctgtcagagattctctgagaatgggagatgtacttttggagaaaaatgtact
gaagctcattctgaagaagagttgaatgaatggaaagaaagatttaagtatcgtagagaa
caactgcaaaaagccagagaaaaacttctacatggaaactcatacacagagaagttaatg
gaaagattgatgttatcagaaaatccttctgctattctagttcaatctatggattttgtt
aaactgcacattaactcagatttaaaagttaacatggtaaataaacgctgtacaaatgct
tggacatttactgttaccagtaagatgtgcttacataatgtatgccttttagatgatgta
aataaatcatatttctgcatttcatccatatctgttggcccgaaaaaaactcaaaaatat
cagaatttagagaacaattgtcaggaatggactaatcaggatgttagtgtaaaggctcac
ggagaatgtgtatatagaatcaaggtggtctttaaaactgatatatttggtacattccga
cagtcaatagtgtttgattttggattggaaactgtattacgtcgtgaaatggaagttgac
tcagcccctgtgctggatacaggaaaattgactaatgatctcttgatagtggaagcagca
agatggacagaagaaaaagttcaaattgttgcttatcaacctaaactgcagcatcatagt
gctacagagaaagacttgctggccaagtatacattaccacgcgctgagaaatattcaacc
attatgcagacattgtccaaggaaaattaccgtctgtggatgcatgagatgttatattta
gaagagatgacacagtacagtttgatatcaggatttaatgtgaagacatcattacaattg
gtgaacagatttttattgatgccaggagcattgtccacagccaaatatgctcataatgga
gaattgtttgccaagatgaagttagaagatgatttgtctgaagatagtataggaggaaga
ttaatattacagaatgctcaaatagcttggatagctttatgtaaatcaaatagtgataag
ccacccaaaaaggtttatgaagttgttatagaagataaaggaaagaattttatattttta
cgattatctaaaaattgtgttgatgaattaaagctatcatgtgatgaagaagtttgtgtc
gtgatccagtttcagttaaaccgattacctaaagttgaaatgcatgctgctgtagataaa
ctaccaactttagatattgtctttcctaacttagacacgctacaaaacataccttggtca
ccagagaggcagtggaatgaagaactggattgtaaattaaatgtaaaacagaaggaagca
atcttggctattactgctgacactgatataattctaccaccattactactggttggtcca
tttggcacaggtaaaacctacacactagctcaggcagtgaaacaagtcttaaaaaatgat
ggcagccgtattctgatctgcacacattcaaacagtgctgctgatctgtacattaaagat
tttttccatccatgttttgaagaaggtgatgaagatattaaaccactacgtatattatat
caatatcgttgggtacaaacagtatctgatgttgttttgaaatataccctatatgattca
tctaccggtatctttaaacatcctacattagaagatctggaaaaacacagaatcattatt
acaactttaagtacagcacgatatataagtgatatcaatgtatctaaagaatttttcact
catatctttattgacgaagctgctcaagctttagaatgtgaaacgttgattccattatct
atggcctgtgaatcaacaagaatagttttagctggagatcacatgcagttaagtcctgaa
gtaagtgcagaattctgtcgccagcaaggttttcatatgtcatttttagagagacttcat
gagatgtatccacgagatcacagttgtaaagtaatgttgtgtgagaattacagatctcat
tctgccattgttgattttacatcagagttattctatgaaaacaaattgatatctagtgga
aaacagaaggcacacagtaaactttaccctttgaccttctatgcagctaaaggagaagaa
gttcaacatccaaatagtacaggattctataatactgcagaggtttatgaagttgttgaa
agagttgaagatctacaaaaaaagtggttggttgatgaatggggaccattagatgaagat
gctattagtgttgttactccctacactgatcaggtgaagagaatacgggcagagttaaga
agaaagaaattatttcgtatttctgttgaacgagtacataatgttcaaggtaaacagtat
cgtgccatcatattaagtacagtaagaacccagaatacgtgtagatctgacagtagggaa
gaagattttatagactatggttttctgtcgaatgttaagttgttaaataccgccataaca
cgagcacagtcattggttatggtagtaggtgatccggtatccttatgtttagtaggaaaa
tgcaggaaagtttgggaatattttttggagatttgtaataagcatggaagtttacatggt
atgacatggacgcaacttcgagctcagttggaaggggtggagatgactaaaacctatact
ttaaatccactcgctccagaatttatacctaatagactgtaccatattactagggcagct
tcagaaacaataggaatgaatctccacagtcaggtaccaatgccaccatggcaacacatg
agtccatattcagtgccgggttataatccagctacttatccgatgtaccaacatatgatg
ccatatccttatcaaggtcaatacgtacccaacatgtacaaccgtgttatgtacaaacaa
ccatctccacccagtactggtggtcgtgcatcacccaaaacaactcgttcaccatcacaa
ctatctccaaatagtcagaaagttcgtgctgaacacaataaagatggtataaagaatgtc
gaaggtaaaccatttcataaaccagctagaagtcggatgatggggtatgtgccaccaagg
gtactaatggctcctcactatagccattattaccctgttgtaccccattatccaggattt
tattatttaccagaagatccaagagtggctgtttatccaaaccagtatgtaccacataga
tctatgcctcatttaatccaccatcctggcagtgaacgtatgtatcctcaaccacttata
ggtcctaatgttgctcataaaaataacaaatctgatactgaatcagacaattctgatgcc
agagtatcacctagtacaaattcgggccagcaaatccaacttttgccaaatgtaaaacat
atcccaggacatctgttcacttgcggacctcaatctactaaaggtgatgcgtcggaaaat
aataatctagagagagcaaacaaaggacaaaaacagcagaaagaagaacgaaggttaaat
gtttcggatagaccatacagtcctgccaactatggaatggatcgttcttctactccaggt
cttgaggaattgaatactgacctgcctccaaaaccaagtcctttttccaacaatcaaggt
ccatttagccaacgtaagtttcacaaaagtcctggatctgataagcagtttgcagaaaaa
caagaaaccttgaagaacagaagaagtggtaaagctctgcatttacgtacaggatttagt
acacaatttgatgatgatctacccactcctacggaagtaaaagatattgttcaaatgcta
gaagactttcatgaagaaaaatcaccatgtcccttgcctattgtttcagcttcaaaagag
atcaaaacacaaactaagacatcaaaagaaaagggtgcagcagctagttccactccaccg
cttaaatttcagttaaatttcacaccaccgaataatggagaagtacaatcctcaaataat
ggaggcaaattgtcatatgctggagttttaagaaaacaaccatcaaattcactctctcca
cagccgaatgctgatcctctaagtggtatagaacctcagacaccaagaacaccatcagga
ttcatcactcctggcggggatatgaatatagatccatttggaattctcaagagtttgaat
attgaacctgccccacgacatagaagttttcaacatttttag
DBGET
integrated database retrieval system
