Plasmodium vinckei vinckei: PVVCY_0100230
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Entry
PVVCY_0100230 CDS
T08061
Name
(RefSeq) ATP-dependent RNA helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVVCY_0100230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_0100230
03041 Spliceosome [BR:
pvv03041
]
PVVCY_0100230
03009 Ribosome biogenesis [BR:
pvv03009
]
PVVCY_0100230
03016 Transfer RNA biogenesis [BR:
pvv03016
]
PVVCY_0100230
Enzymes [BR:
pvv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PVVCY_0100230
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PVVCY_0100230
Spliceosome [BR:
pvv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PVVCY_0100230
Complex C
U4/U6.U5 tri-SnRNP related factors
PVVCY_0100230
Ribosome biogenesis [BR:
pvv03009
]
Eukaryotic type
Pre-60S particles
Helicases
PVVCY_0100230
Transfer RNA biogenesis [BR:
pvv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PVVCY_0100230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
Motif
Other DBs
NCBI-GeneID:
19962976
NCBI-ProteinID:
XP_008626629
UniProt:
A0A081I9A1
LinkDB
All DBs
Position
PVVCY_01:join(87663..91414,91534..91669)
Genome browser
AA seq
1295 aa
AA seq
DB search
MSENIDDLFNVFEEDETKKNLLNNGKGFDGLNVILEEQNGQDNIDYANNNTTEVEINENG
IEMEINYESPEYNAPIDYKINVDNIISNHKSNNKIKDQIKQEIYNEIGSINGNNNFFNNK
IRKKNEENNQTKNGIKTNTHKEPIREKLIENSKTINNDDVLVLEEFGSDVNCIHKCVRPQ
SYVHNKLNESITPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGL
RDKQRVIYTSPIKALSNQKYRDLSEEFKDVGLITGDISINPEASIIVMTTEILRSMLYRG
SSLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSI
KNQACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKNFKKDNFIKAVNALKDKSTLDEN
NHSGGNNKFNKRMRKNTYDIEKIVQMCHSRNYTPLIIFAFSKKECEVNATTLNKVNLTDD
SEKEVIKELYENAIQILADDDKALPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQES
LLKVLFSTETFSMGINMPAKTVVFTSLKKFDGVEKRLITSGEYIQMAGRAGRRGLDDRGI
VIIMLDSPLHWKDAEKLFVGEANRLISQFHLGYNMILNLLRIEGITPEFMIERSFIQYQM
KKNLFEQIFASKKVEQKSQEILNILKNIYLDQNGEEFTKAYLLNKVKTNDVETILKITNV
KNEGTPNLLQNNDPNDSKTINDYNNSEASNPELKNYITTFSEISNYYTTRNVLVELGENY
RSLLTSKKNIAQYLTMGRLLYAVEDDLKWGWCICIEGKITEEKYNNNNKNNSAGHNRNTR
NSNHIIGYDTNHTNSSNDTKFNKKNSMEDNKNNANILVVECLVPYVQNKKRKLPQNDDDD
DGENSKKRDLEFLPAHDRLKAQWKVMTFYIKCIYQISAVVLNIEKPFDKYSEEEIEKVRN
KYNTMVSCLKGEKNIPVISPNQMNIKDDTFFKIVKKIYYHENLLNKNKLLNNKNLNKYYQ
LYSKYVALQFEKNILDNSIEQCRFIVLKKELNNMLILLESLNYIEITYKTHEKNQTNDQP
NRSESENYQNQIDGNNENLLTQSDTHNDITNKNNNDEKNYIVTMKGQIASAILSVDELVI
SELFFSNFFSKYTYDYICAFLSCFVYDESAGKEITINDPILIEGYQQITKTATVIANKMN
QCGMNINVKEYLEKFKSAIMPIVLLWARGHSFMDILADSQIYEGSIIRTLRRLDELLRQM
ICAFRGINNDNMCETLTTATKKLRRGIPFSPSLYL
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatatcgatgatttatttaatgtttttgaggaggatgagacaaaaaaaaac
ctattaaataatggcaaaggattcgacggtctaaatgttattctagaagagcaaaatggc
caagacaatatagactatgcaaataacaacacaacagaagtcgaaattaatgaaaatgga
attgaaatggaaataaattacgaaagtcccgaatataatgccccaatagactacaagata
aacgttgacaatataataagcaatcataaaagtaataataaaataaaagatcaaattaaa
caagaaatatataatgagatcggaagtataaatggaaataataatttttttaataataaa
ataagaaaaaagaatgaagaaaataatcaaacaaaaaacggaataaaaacaaacacacat
aaagaacctattcgggaaaaactaattgaaaatagcaagacaataaataatgatgatgtt
ttagttttagaggaatttggtagcgatgtgaattgcatacataaatgtgttaggcctcaa
agctatgtacataataaattaaatgaatctataacacctgctagaacatataaatttgag
ttagatacttttcaaaaaaaatcaatagaatgcttagaaagaaatgaaagtgttttggta
tctgctcacacatctgctgggaaaacagttatagcagaatatgcaatagcattaggattg
agagataaacaaagagtaatttatacaagtcctataaaagctctaagtaatcaaaaatat
agagatttgagtgaagaatttaaagatgtaggattaattacaggtgatatatcaataaat
ccagaagcatctataatagttatgacaacagaaattctgagatctatgctatatcgagga
tcttcattaacgaaagaagttaaatgggtcatatttgatgaaattcattatatgagagat
agagatagaggtgttatatgggaagagactattatattattgccattaatggttcgattt
attttcttaagtgctactataccaaatggtatacaatttgctgaatgggttagtagtatt
aaaaaccaagcatgtcatattgtgtatacagattataggcctacgcctcttcaacattat
atttatcctacatctagtgaaagtgtatttttaatatgtgatgaaaataaaaattttaaa
aaagataattttataaaggcggttaacgcactgaaagataaaagcacgttagatgaaaac
aaccatagtggtggtaataataaatttaataaacgtatgagaaaaaatacatatgacatt
gaaaaaattgttcaaatgtgtcactctcgtaattatactcctttaattattttcgcattt
tcaaagaaagaatgcgaagttaatgctacaacattaaataaagttaatttaactgatgat
tcagaaaaagaagtcataaaagaattatatgaaaatgctattcaaatattagcagatgac
gataaagcattaccacaagtgcagtttattttaccactattgttaagaggaattggtata
catcatgggggattattaccaataattaaagaaattatagaaattatgtttcaagaatca
ttattaaaagttttatttagtactgaaacattttctatgggcataaatatgccagctaaa
acagtcgtatttacatcattaaaaaaatttgatggggtagaaaaaagattaataacatca
ggtgaatatattcaaatggcgggaagagctggaagaagaggattagatgatagagggatt
gttattattatgctagatagcccattacattggaaagatgctgaaaaattgtttgtaggt
gaagctaatcgattaatcagccaatttcatttaggttataatatgatattaaatttatta
agaatcgaaggtattacaccagaatttatgatcgaaagatcttttattcaatatcaaatg
aaaaaaaatctttttgaacaaatctttgcatcaaaaaaagttgaacaaaaaagtcaagaa
attttaaatatattgaaaaatatttatttagatcaaaatggggaagagtttactaaagcg
tatttattaaataaagttaagacaaacgatgtagaaacaattttaaaaattactaatgta
aaaaatgaaggaacacctaatttacttcaaaataacgatccaaatgattccaaaacaata
aatgattataataatagtgaagcttcaaaccccgaactcaaaaattatattactacattt
tctgaaatatctaattactacacaacacgaaatgtacttgttgaactaggggaaaattat
agatcattattaacatctaaaaaaaacatagctcaatatttgaccatgggcaggttacta
tatgctgttgaggatgacttgaagtggggttggtgtatttgtattgaagggaaaattact
gaagaaaaatataacaataataataagaataatagtgcaggacataatcgtaatacaaga
aatagcaatcatattattggctatgataccaaccacaccaatagttccaacgatacaaaa
tttaataaaaaaaactccatggaagataataaaaataatgcaaatatattagttgtagaa
tgcttagttccctatgttcaaaacaaaaaacgaaaattgccacaaaatgatgatgatgat
gatggtgaaaattccaaaaaaagggatttagaatttttaccagctcatgatagattaaaa
gctcaatggaaagtcatgacattttatataaaatgcatatatcaaatatcggcagttgtt
ttaaatatagaaaagccatttgataaatattctgaagaagaaattgaaaaagttagaaat
aaatataatactatggtaagctgcttaaaaggcgaaaagaatataccagttattagtcca
aatcaaatgaatattaaagatgatacattttttaaaattgttaaaaagatttattatcat
gaaaatttattaaataaaaataaattattaaataataaaaatttaaataaatattatcaa
ttatatagtaaatatgttgctttgcaatttgaaaaaaacatactcgataacagtattgaa
caatgcagatttattgtcttaaaaaaggaattaaataatatgctcattttattagaaagc
ttaaactatattgaaattacatataaaactcatgaaaaaaatcaaacaaatgatcaacca
aatcgttccgaaagcgaaaattaccaaaaccaaattgatggaaacaacgaaaatttgctt
acacaaagtgacacccataatgatatcactaataaaaataataatgacgaaaaaaactat
attgttacaatgaaaggacaaatagctagtgcaattttaagtgtggatgaattagttata
tctgaattatttttttcgaattttttcagtaaatacacttatgattatatatgcgcattc
ctatcatgttttgtatatgatgagtcagcaggtaaagaaattaccattaacgatcctata
cttatcgaaggatatcagcaaataacaaaaacagcaacagtaatagctaataaaatgaat
caatgtggaatgaatataaatgtaaaagaatatttggagaaatttaaatcagccattatg
cctattgttttgttatgggctcgtggccactccttcatggatattctcgcggattcacaa
atatatgaaggatcaataataagaacattaaggcgtttggatgaactgctaagacaaatg
atttgtgcatttagaggaattaataatgataatatgtgtgaaaccttaaccaccgctaca
aaaaagttgcgccggggaattccattttcaccgtccctctatttataa
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