Plasmodium vinckei vinckei: PVVCY_0300780
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Entry
PVVCY_0300780 CDS
T08061
Name
(RefSeq) ATP-dependent RNA helicase UAP56, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03013
Nucleocytoplasmic transport
pvv03015
mRNA surveillance pathway
pvv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVVCY_0300780
09122 Translation
03013 Nucleocytoplasmic transport
PVVCY_0300780
03015 mRNA surveillance pathway
PVVCY_0300780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_0300780
03041 Spliceosome [BR:
pvv03041
]
PVVCY_0300780
Enzymes [BR:
pvv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVVCY_0300780
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PVVCY_0300780
Spliceosome [BR:
pvv03041
]
Complex C
Other components
EJC/TREX
PVVCY_0300780
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PVVCY_0300780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
19962857
NCBI-ProteinID:
XP_008626510
UniProt:
A0A081I9V9
A0A449BMX2
LinkDB
All DBs
Position
PVVCY_03:complement(join(266795..267891,267984..268269))
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AA seq
460 aa
AA seq
DB search
MAGIGHNVQDELVDYEDDDNMLDNKDVKGGIGRNLLNNNNKGVNDGGAMRGSYATVHTGG
FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ
LETDSKDIKEEKDINNAGGDVNQNKYVRCLGIAHTRELAYQIKNEFDRFSKYLKNVRCEV
VYGGISMNKHVALFKGNNVPHIIIGTPGRILALIREKYLLTDKIQHFVLDECDKCLEKLD
MRGDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHY
VKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSISIHGGLNQQER
IERYDKFKKFENRILVSTDLFGRGIDIERINIVINYDMPENSDSYLHRVGRAGRFGTKGL
AVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggctggaattgggcataatgttcaagatgagttagtagattacgaagatgatgataac
atgttagataataaggatgtcaaaggtggcatcggacgtaaccttttgaataacaataat
aaaggagttaatgatggtggtgctatgaggggtagttatgctactgttcatactggaggg
tttaaagatttttttttaaaaccagaattattaagagcaattagcgaaagtggatttgaa
catccatctgaggtacagcaagaaactataccagcagcaataacaggtactgatatttta
tgtcaagcaaagagtggtatgggaaaaactgcggtttttgttttatcaattttacaacaa
cttgaaactgatagcaaagatataaaagaagaaaaggatattaacaatgctggtggagat
gtaaatcaaaataaatatgttagatgtttaggtatagcacatactcgtgaattagcctat
caaataaaaaatgaatttgatagatttagcaaatatttaaaaaatgttaggtgtgaagtt
gtttatggtggtatatctatgaataaacatgtagccttattcaaaggaaataatgtaccc
catataattattggtacacctggtcgtatattagcattaattagagaaaaatatttatta
acagacaagattcaacattttgttttagatgaatgtgataaatgtttagaaaaattagat
atgagaggggatgtacagaaaatttttatttctactcctttaaaaaaacaagttatgttt
ttttcagcaactatggcaaaagaaatgagagatgtatgcaaaaaatttttacaaaaccct
gtagaaatatttattgatgatgaagctaaattaaaattacatggactattacaacattat
gttaaattacaagaaaaagataaaacaagaaaattaatagaaatattagatgccttagaa
ttcaaccaagttataatttttgttaaatctgttacaagagctatcacattagataaatta
ttaactgaatgcaatttcccatccatatctatacatggtggtttaaatcaacaagaaaga
attgaaagatatgataaatttaaaaagtttgaaaacagaatattagtatccactgattta
tttggaagaggtattgatattgaaagaataaatatcgttattaattatgatatgccagaa
aattcagattcttatttacacagagtcggaagagctggaagatttggtacaaaaggttta
gctgttacttttgtatcttctcaagaagatacattagctttaaatgaagtccaaaccaga
tttgaggtagctatttctgagatgccaaataaaatcgattgtaacgaatatattaaccaa
taa
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