Plasmodium vinckei vinckei: PVVCY_0301330
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Entry
PVVCY_0301330 CDS
T08061
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2, putative
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03020
RNA polymerase
pvv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVVCY_0301330
09124 Replication and repair
03420 Nucleotide excision repair
PVVCY_0301330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvv03021
]
PVVCY_0301330
03400 DNA repair and recombination proteins [BR:
pvv03400
]
PVVCY_0301330
Enzymes [BR:
pvv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVVCY_0301330
Transcription machinery [BR:
pvv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PVVCY_0301330
DNA repair and recombination proteins [BR:
pvv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PVVCY_0301330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
19962911
NCBI-ProteinID:
XP_008626564
UniProt:
A0A081IA13
A0A449BN24
LinkDB
All DBs
Position
PVVCY_03:join(450480..450531,450668..454551)
Genome browser
AA seq
1311 aa
AA seq
DB search
MHVKIENPYPHPGFMKPDHGIEDVSDKDDDDQINEDDSWVVIGSFFASHGLVNQQIESYN
DFIEYRMQEIIDEHPHIEIKPQPQYRPDKDENTNIIYSLKFGQLSLDRPFFDEKNLINKN
LWPQEARLRNLTYSSAIYIDIEQSTYMIDEITKKQILKEKFVYERINLGRIPLMLKSMFC
WTKGLPENDISDMGECSLDQGGYFIVNGGEKVLVAQERMANNFIYVFKKKHSSKFGWIAE
IRSQMEKSQATSGFSVKMKTKSGSRTGGSGRSSGGLLVATLPYIRTEISVGILFRALGCT
SDRDILQRIVYDFNDKMMINIMRETLEECIDYPTQDICLDYIGKRGPTVGASRDKRILYA
KELLRKEVLPHMGTGPGVESKKSYFIGYMINRLLLAELGRIKEDDRDHFGKKRLDIAGPL
MASSFATYFRKMAKDVRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKD
GKVIRTGVAQVLNRLTYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQ
SVGLVKNLSLMCDISVGTSTNNIYEFLTEWGLESLDEVPPQLMNEKVKLFLNGKWVGCFN
QIDNLIETLYELRRRCDISPEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNVGGKNKLKL
TKEHIRNATKYPDQYNWDYFIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYYNNYTHCE
IHPSLILGVCASIIPFSDHNQSPRNTYQSAMSKQAMGIYVTNFNIRLDTLAHLLYYPQKP
LVCTKATEYLHFKDLPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSE
EKQQGSLIIESFEKPSVRVVKGLKRGDYTKLEDDGLIAPGIRVLGDDIIIGKVSPSIDDE
EDIIIQKKIPNASLTASNNKNIYDNTVGSDNISSSSSVMGSPSYTSSMLDAGSDPNGNER
YGSGSSSVGSDTASRINSVSGQSHTTLVSGADSDRYGSTAGATIREDVEVPTLTIRTTSA
MKQYKKDCSLSIRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGT
IGITYRMEDMPFTSDGTFPDIIMNPHAVPSRMTIGHLVECLAGKVAAIEGGEGDATPFSK
ITVQEISERLHRLGYEKYGNDILYNGHNGRMLKSKIFIGPTFYQRLKHMVEDKIHARSRG
PLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDTCGLC
CVADINKNAYECTICNSKTNISQIYIPYACKLLFQELMTMAIYPKLVLEDM
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttaaaattgaaaacccgtatccccaccctgggtttatgaagccagaccatggc
attgaagatgtgagcgacaaagatgacgacgaccaaatcaatgaagacgatagttgggtt
gttatagggtctttttttgctagtcacggtttagtaaatcaacaaattgaaagttataat
gattttatagaatatagaatgcaagaaataatagatgaacatccacatattgaaataaaa
ccacaaccacaatatagacctgataaagatgaaaatactaatataatatattctttaaaa
tttggacaactatcattagatagaccattttttgatgaaaaaaatttaattaataaaaat
ctatggcctcaagaagccagattaagaaacttaacttattcatctgctatatatattgat
atagagcaaagtacatatatgattgatgaaattacaaaaaaacaaattttaaaagaaaag
tttgtatatgaacgtataaatttaggtagaatacctcttatgcttaaatctatgttttgt
tggacaaagggtttacctgaaaatgatatctctgatatgggagaatgtagtttagatcaa
ggtggttattttattgtaaatggtggtgagaaagttttagttgctcaagaaagaatggca
aataattttatatatgtatttaaaaaaaaacattcttcaaaatttggatggattgcagaa
attcgatctcaaatggaaaaatcacaagctacatctggtttttctgtaaaaatgaaaaca
aaatcgggttctagaactggtggttctggaagatcaagtggtggattacttgttgctaca
ttaccatatataagaactgaaatatcagttggaatattatttagagcattaggttgtact
tcggatcgagatatattacaacgtattgtctacgactttaatgacaaaatgatgattaac
ataatgagagaaacattagaagaatgtattgattatcctactcaagatatatgtttagat
tatattggaaaaagaggtccaacagttggtgcatcaagagataaaagaattttatatgca
aaagaattattacgtaaagaggtattaccacatatgggtacaggcccaggtgttgaaagt
aaaaaatcgtattttattggatatatgataaatagattattattagcagaattaggaaga
attaaagaagatgatagagatcattttggaaagaaaagattagatatagctggtccactt
atggctagtagttttgctacttactttagaaaaatggcaaaagatgtaagaagggtatta
caaagacaaatagataataataaaccttttgatgtagctggagcgataagaagttgttca
caaataacacaaggaatgcaatatcaattagctacaggaaattggggtaaagataaagat
gggaaagttataagaacaggggtagctcaagttttaaacagattaacatattcttcttgc
ttatcgcatttaagaagattaaacacaccattaggtagagaagggaaaatggcaaaacca
agacaattgcataatacacattggggtatgatatgcccttttgaaacaccagaaggtcaa
tctgttggtctagtaaaaaatttatcattaatgtgtgatataagtgttggtacatctact
aataatatatatgaatttttaacagaatggggtctagaatcattagatgaagtaccacca
caattaatgaatgaaaaagtgaaattatttttaaatggaaaatgggttggatgttttaat
caaatagataacttaatagaaactctatatgaattacgaagaagatgtgatatatcacca
gaagcatcaattgttagagatgtaaatagtaaagaaataaaaatttttaccgattctggt
cgagctatgagaccgttatatgttgtaaaaaatgtaggaggtaaaaataaattaaaatta
actaaagaacatattagaaatgctacaaaatatccagatcaatataattgggattatttt
atacaagaaggtattatagaatatatagattgtgaagaagaagaaacaactatgataagt
atgtttatagatgatttaaaaacagggacgggttattataataattatacacattgtgaa
attcatccatctttaattttaggagtttgtgcatctattattccatttagtgatcataat
caaagtccccgtaatacatatcaaagtgcaatgagtaaacaagcaatgggaatttatgta
acaaattttaatatacggttagatacgttagctcatttattatactatccacaaaaacca
ttagtatgtacaaaagctactgaatatttacactttaaagatttaccagctggaataaat
gcaattgtagcaattatgtgctatacaggatataaccaagaagatagtttaatcatgaat
caatcatctattgatcggggtctatttagaagtgttttttatcgtacttatactagtgaa
gaaaaacagcaaggtagtttaattattgaatcatttgaaaaaccatcagtaagagtagta
aaagggttgaagagaggtgattatacaaaattagaagatgatggtttgatagcacctgga
attcgggttcttggtgatgatattataattgggaaagtatctccaagtattgatgatgaa
gaagatataataattcaaaaaaaaattcctaatgcttctttaactgcatctaataataaa
aatatttatgataatacagttggtagtgataatattagtagtagttctagtgtgatggga
agtccatcttatacttctagtatgttagatgcaggttctgatcccaatggaaatgaaaga
tatggatctggtagtagtagtgttggaagtgatactgcatctagaatcaattcagtgtca
ggccaatcacatactacattagtatcaggagcagacagtgatagatatggtagtactgct
ggtgctactattagagaagatgtagaagtaccgacattaactattcgaactactagtgca
atgaaacaatataaaaaagattgttctttaagtatacgatcaaatgaaaatggtgttata
gatacagttatgttatcatcaaatagtagaggtaataaatttgctaaagtaaaagtacga
tctgttagaataccccaaattggagataagtttgcaagtaggcatggacaaaaaggtaca
atcggtataacctatagaatggaagatatgccatttacatctgatggtacatttcctgat
attattatgaacccacatgcagttccatctcgtatgactatcgggcatttagttgaatgc
ttagctggtaaagtagctgctattgagggaggagaaggagatgcaaccccattttctaaa
attacagttcaagaaatttctgaacgtttacatagattaggttatgaaaaatatggtaat
gatatattatataatggacataatggtagaatgctaaaatcgaaaatatttataggacca
acattttatcaaagattaaaacatatggtagaagataaaatacatgccagaagtagagga
cctctaactatgattacaagacaaccaacagaaggaagatcaagagatggtggtttaaga
tttggagaaatggaaagagattgtatgatatctcatggatctgctaaaatgttaaaagaa
cgtttatttgaagaaagtgatgcatatcgtgttcatgtctgtgatacttgtggtttatgt
tgtgtagcagatataaataaaaatgcttatgaatgcactatatgtaatagtaagacaaat
atttcacaaatttatattccatatgcatgtaagttactttttcaagaactaatgacaatg
gcaatatatccaaaacttgttctcgaagatatgtaa
DBGET
integrated database retrieval system
