Plasmodium vinckei vinckei: PVVCY_0501460
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Entry
PVVCY_0501460 CDS
T08061
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22, putative
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVVCY_0501460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvv03041
]
PVVCY_0501460
Enzymes [BR:
pvv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PVVCY_0501460
Spliceosome [BR:
pvv03041
]
Complex C
Other components
Step II factors
PVVCY_0501460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
S1
AAA_19
GIPC1_GH2
PhoH
T2SSE
Sigma54_activ_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
19962078
NCBI-ProteinID:
XP_037490217
UniProt:
A0A449BP81
LinkDB
All DBs
Position
PVVCY_05:complement(join(531919..533361,533471..533599,533937..533993,534076..536115))
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AA seq
1222 aa
AA seq
DB search
MDGLKKINLIQKINEKLYDHLGIEDENLTEFIIFLCEKSTCLEEFCKEVFENGGEIEQSV
LKSIYNLIKKSKNETNDNEKVGENEKDVSNNNVSKEIQEIEKKNEKMKKFGCLSIKNSTN
LPDLTDHSSEEEKDKHNSYDKKTEHKSHRHSSHRKKETDENDTSKKNRHKDYSSDDDRGR
KRSKYDDGKRSKYDDGKRSKYDDGKRSKYDDGKRSKYDDGKRSKYDDGKRSKYDDGKRSK
RDDSSEPDYRALKVGNIFSGSIKKITDFGMFVSFKTREGYKEGLVHITDVEKNNKKINLN
ENYKRNMIVKVKIKGIFGEKISLNMSEVDQKTGKNLVDDNYKENDFNKNETSFFDNIEDE
FKYKKNKHNNDKYSKYFDDPNETIKYESVIKMKSDYSKWEIQQLIKSGIIYDENIKNEYK
NLKYEEKIDDEEEMIEIEVNEREPNFLKGQTTKAGANLSPIQIIVNAEGSLARAITTTSA
LTKERKEEKKNEQNALFDSIPKDISRPWEDPKPNLGERTIAEALKNVGKSYDLPDWKKNY
INNNISIGMKNSLPLNEQREKLPIYNLKIDLMKAIKKNNVLIVIGETGSGKTTQIPQYLH
EAKYTELGIVGCTQPRRVAAMSIAKRVSEEFGCILGQEVGYSIRFDDCTSNDTIIKYLTD
GMLLREALSDTMLSKYSFIILDEAHERTISTDILFCLLKDVVKKRSDFKLIVTSATLDAE
KFSTYFFNSPIFTIPGKIFPVEILHSKEPESDYVEACLITVLNIHLNEHPGDILVFLTGQ
EEINTACEILHERMKKLESMSPPPLIILPIYSSLPSEMQSIIFEPAPPGCRKCILATNIA
EASLTIDGIFFVIDPGFCKIKKYDSKRDMDSLIIAPISKANAKQRAGRAGRTGPGKCYRL
YTEEAYKNEMAETSVPEIQRINLGSIVLLLKALGVNDFLHFDFMDSPSIETLIHSLESLY
YLGALDDNGYLTKLGKKMSNFPMEPNLSKILLTSINFNCTDDICTIVSMISVQNIFYRPQ
NKILLADKKKNKFVMPQGDLITYLNIYNKWKENSFSNYWCHENFIQSRALKRAQDVRKQL
LSIFEKYNYQVKKREDGISNSTNYVNICKSICSGYFNHVCKRDSQQGYTTLLTNQQVFIH
PSSTLFSKNPLFVVYHELVLTNKEYIRDCTIIQPQWLIQLAPNLFIPADEKKISKIKLRE
KIEPLHNYYEEPNAWRLSRRKG
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggatgggttaaagaaaataaacttaattcaaaaaataaatgaaaaattatatgaccat
ttaggaattgaagatgaaaacttaacagagtttattatttttttatgtgaaaaatctaca
tgcttagaagaattttgtaaggaagtatttgaaaatggaggagaaatcgagcaatcagta
cttaaaagtatttataatttaattaaaaaatcaaaaaatgaaacaaatgataatgaaaag
gttggagaaaacgagaaggatgtaagtaataataatgtttcaaaagagattcaagagatt
gaaaaaaaaaatgaaaaaatgaaaaagtttggatgcctatcaattaaaaatagtaccaat
ttacctgatcttactgatcatagtagtgaagaagaaaaagacaaacacaactcatatgat
aaaaaaacagaacataaatctcatcgacattctagtcatagaaaaaaagaaacagatgaa
aatgatacatcaaaaaagaacagacacaaagactattcttcagatgatgaccgaggtaga
aaaagatcaaagtatgacgatggaaaaagatcaaagtatgacgatggaaaaaggtcaaag
tatgacgatggaaaaagatcaaagtatgacgatggaaaaagatcaaagtatgacgatgga
aaaagatcaaagtatgacgatggaaaaagatcaaagtatgacgatggaaaaagatcaaag
cgtgatgacagtagtgaaccagattaccgggcactaaaagtaggtaacatatttagcggg
agtattaaaaaaattactgactttgggatgtttgtttcttttaaaactagggaaggatat
aaagaggggttagtacatataacagatgttgaaaaaaataataaaaaaataaatttaaat
gaaaattataaaagaaatatgattgttaaagtcaaaataaaaggaatatttggtgagaag
attagtttaaatatgtctgaagttgatcaaaaaactggaaaaaatttagttgatgataat
tataaagaaaatgatttcaacaaaaatgaaacttctttttttgacaatatagaagatgaa
tttaaatataaaaaaaataaacataataatgataaatattctaaatactttgatgatcca
aatgaaacaatcaaatatgaaagtgttataaaaatgaaaagtgattattcaaaatgggaa
atacaacaattaataaaaagcggcataatatatgatgagaatataaaaaatgaatataaa
aatttaaagtatgaagaaaaaatagatgatgaagaagagatgattgaaatcgaagttaat
gaaagagagccaaattttttaaaaggacaaactacaaaagcaggtgcaaatttatcacct
atccaaattattgtaaatgctgaaggatcattagctagagctataacaacaacatctgca
ttaacaaaagaaagaaaagaagaaaaaaaaaatgaacaaaatgcattatttgattctata
cctaaagatattagtagaccttgggaagatcctaaacctaatctaggagaaagaacaata
gcagaagcattaaaaaatgttggaaaaagttatgatctaccagattggaaaaaaaattat
ataaataataatatatctataggtatgaaaaattcattacctttaaatgaacaaagagaa
aaattacctatttataatttaaaaattgatttaatgaaagctataaaaaaaaataatgta
cttatagttattggtgaaacaggtagtggtaaaacgacacaaatacctcaatatttacat
gaagctaaatatacagaacttggaattgtaggatgtacacaaccaagaagagttgctgct
atgtcaattgcaaaaagagttagtgaagaatttggttgtatattgggacaagaagttgga
tattctatacgttttgatgattgtacttccaatgatacaataattaaatatctaacagat
ggtatgcttttaagagaagccctaagcgataccatgctatccaaatattccttcataata
cttgacgaagcccacgaaaggacaatctcaacggatatccttttttgccttctaaaggat
gttgttaagaagagatccgattttaagctcatcgtcacgtctgctactttagatgcagaa
aagttttctacttactttttcaattccccgattttcacaatcccaggaaaaatattccca
gtcgagattcttcactcgaaggaaccggaaagtgattatgtagaggcgtgccttatcaca
gttttaaacattcacctaaatgagcatcctggcgatattttagtatttttaacagggcag
gaagaaattaatacagcttgtgaaatattacatgaacgtatgaaaaaattagagagtatg
tctccccctcctttaattatattacctatatattcatcactgccatcagaaatgcaaagt
ataatatttgagcctgcacccccaggatgtagaaaatgtatattagcaacaaacatagca
gaagctagtttaacaatagatggtatattttttgtaatagatcctggattttgtaaaata
aaaaaatatgattcaaaaagagatatggattcattaataatagcccctatatctaaagca
aatgctaaacaaagagcaggtagagcaggtagaactgggcctggtaaatgctataggtta
tatactgaagaggcatataagaatgaaatggcagaaactagcgtaccagaaatacagaga
ataaacttaggaagtatagtattattattaaaagcattaggggttaatgattttttacac
tttgattttatggattcaccatctattgaaactcttatacactcattagaaagtttatat
tatttaggggcattagatgataatggctatttaactaagttaggaaaaaaaatgtcaaat
tttcctatggaacctaatttatctaagatattattaacttcaattaattttaattgtact
gatgatatatgtactatcgttagtatgatcagtgttcagaatattttttatagacctcaa
aataaaattttattagcagataaaaaaaaaaataaatttgtaatgccacaaggagattta
attacatatttaaatatttataataaatggaaagaaaatagtttttcaaattattggtgt
catgaaaattttattcaatcaagagcattaaaaagagctcaagatgttcgaaaacaatta
ttatcaatttttgaaaaatataattatcaagttaaaaaaagagaagatggtattagtaat
tctactaattatgttaatatatgtaaaagtatttgttcaggatattttaatcatgtatgt
aaaagagatagtcaacaaggatatacaactttattaacaaaccaacaagtttttatacat
ccatcttcaactctttttagtaagaatccattatttgttgtatatcatgaactcgtttta
actaataaagaatatataagagattgtacaataattcaaccccaatggctaatacaatta
gctcctaacttatttataccagccgatgaaaaaaaaatatcaaagattaaacttagagaa
aaaatcgagcccctacataattactatgaagaacccaatgcttggcgattgtctagaaga
aaagggtag
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