Plasmodium vinckei vinckei: PVVCY_0600790
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Entry
PVVCY_0600790 CDS
T08061
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7, putative
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03018
RNA degradation
pvv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVVCY_0600790
09123 Folding, sorting and degradation
03018 RNA degradation
PVVCY_0600790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_0600790
03041 Spliceosome [BR:
pvv03041
]
PVVCY_0600790
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PVVCY_0600790
mRNA degradation factors
5'-3' decay
Lsm complex
PVVCY_0600790
Spliceosome [BR:
pvv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PVVCY_0600790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
19961780
NCBI-ProteinID:
XP_008625445
UniProt:
A0A081ICS0
LinkDB
All DBs
Position
PVVCY_06:join(301549..301663,301880..301951,302042..302112,302227..302295)
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AA seq
108 aa
AA seq
DB search
MSVLPGPTENINKDNKFMNDIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEF
IRDPNDSYVITEKSRNIGLIVARGTSVALITPVNGTQEISNPFISEEK
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtattaccaggacctacagaaaatatcaacaaagataataagtttatgaatgat
attaaaaaattcatgaaccaaaaaattagagtaaaattcgatgggggaagagaagttgtt
ggcaatttgattggccatgatgccatatttaacttagttctagacaaaaccgaagaattt
atacgagatccaaatgatagttatgtaataactgaaaaaagtagaaatattggattaatt
gtagcccgaggaacttcggttgctttgattacccccgttaatggcactcaagaaatttca
aacccatttatatcggaagaaaaatag
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