KEGG   Plasmodium vinckei vinckei: PVVCY_0601780
Entry
PVVCY_0601780     CDS       T08061                                 
Name
(RefSeq) exosome complex component CSL4, putative
  KO
K07573  exosome complex component CSL4
Organism
pvv  Plasmodium vinckei vinckei
Pathway
pvv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pvv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PVVCY_0601780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pvv03019]
    PVVCY_0601780
Messenger RNA biogenesis [BR:pvv03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PVVCY_0601780
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     PVVCY_0601780
SSDB
Motif
Pfam: ECR1_N EXOSC1 ECR1_N_2 RRP4_S1
Other DBs
NCBI-GeneID: 19961877
NCBI-ProteinID: XP_008625540
UniProt: A0A081ID15
LinkDB
Position
PVVCY_06:join(666234..666702,666849..666964)
AA seq 194 aa
MDNIVLPGEVVGNLNNYISGNNTYILKNEIRSTILGKKNISINNENKQIINIDVIKDYVP
LPQVGDLVICKVYRVTFNMIYCNIMLTNNKPLKNSLKGYINKSDIHIYEGDLGDNFDCFK
QGDIIKAKVLSIGQHSSYKLSTVGSDLGVIIALSEKGDILQPVAWNLMVNLSDMSFEQRK
VSNEFSFSHNAYMS
NT seq 585 nt   +upstreamnt  +downstreamnt
atggataatattgtattacctggagaagtagtgggaaacctaaataattatataagtgga
aataatacatatatattgaaaaatgaaataagatcaacaatattaggtaaaaagaatatt
agtattaataatgaaaacaaacaaattattaatattgacgttataaaagattatgtaccc
ttgccccaagtaggagatcttgttatatgcaaagtttatagagtaacatttaatatgata
tattgtaatatcatgttaacaaataataagccattaaaaaatagtcttaaagggtatata
aataaaagtgatatacatatatatgaaggagatttaggagataattttgattgttttaaa
caaggagacataattaaagcaaaggttttatcaataggtcagcattcgtcatataagctt
tctactgttggatcggacttaggtgtcattatagccttaagcgaaaagggtgatatctta
caacccgtggcatggaatttgatggtcaatttaagtgacatgagcttcgaacaaagaaag
gtctccaacgagttttccttctctcataatgcttacatgtcataa

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