Plasmodium vinckei vinckei: PVVCY_0700130
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Entry
PVVCY_0700130 CDS
T08061
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm8, putative
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03018
RNA degradation
pvv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVVCY_0700130
09123 Folding, sorting and degradation
03018 RNA degradation
PVVCY_0700130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_0700130
03041 Spliceosome [BR:
pvv03041
]
PVVCY_0700130
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PVVCY_0700130
mRNA degradation factors
5'-3' decay
Lsm complex
PVVCY_0700130
Spliceosome [BR:
pvv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PVVCY_0700130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
19962601
NCBI-ProteinID:
XP_008626258
UniProt:
A0A081IB91
A0A449BQ97
LinkDB
All DBs
Position
PVVCY_07:complement(join(48400..48411,48508..48586,48700..48862,48950..48983))
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AA seq
95 aa
AA seq
DB search
MASINIESYIENEILVITKDGRIFTGKLKGFDQTTNIIIGNCYERIYKESLEKISLGIYI
IRGDNVTLIGEIDEEVDRNILQNKIKPEMLKPIIY
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atggcttctataaatattgaatcatatatagaaaatgaaatattagtcattactaaagat
ggtagaatatttacgggaaaattaaaagggtttgatcaaacaacaaatataataatagga
aattgttatgaaaggatatacaaagaatctttggaaaaaataagcttaggaatatatatt
ataagaggagataatgtaacactaataggggaaatcgacgaagaggtggatagaaacata
cttcaaaataaaattaagcctgaaatgctcaaaccaataatatactag
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