Plasmodium vinckei vinckei: PVVCY_0800830
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Entry
PVVCY_0800830 CDS
T08061
Name
(RefSeq) exosome complex component RRP4, putative
KO
K03679
exosome complex component RRP4
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVVCY_0800830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_0800830
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PVVCY_0800830
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PVVCY_0800830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
3HCDH
DUF2110
Motif
Other DBs
NCBI-GeneID:
19961446
NCBI-ProteinID:
XP_008625111
UniProt:
A0A449BR69
LinkDB
All DBs
Position
PVVCY_08:325880..326860
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AA seq
326 aa
AA seq
DB search
MDLIVITPYDEELDDIEELNNKILALEMIKHNKSNVNKNADNSCPNIKKLVLPGEAVLEK
KDKPRFLKGSGLYEEEENFCACILGSVNYINKLVYVEPLRGKYTGSVGDLLVGKIKDINN
DKWVVEIGSYCRALLSITQTNISLFSQRIRLYNDVINMINIYKPNDVIACEVQRILTDGC
IILHTRSSIYGKLSNGILITVPQTLVQNQKKHIFVFPCNVQIILGMNGFIWISSPIKKSK
DTNPNSIDENIEENKFEEVDDTTRKNISIISNIIKLLAKYHININYDIITKIYMQYTSNK
SNTPSYILKPYVSDSYLFSYLENFTK
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggatttaattgtcatcacgccctatgatgaagaactggatgatatcgaagagctaaat
aataaaatattggctcttgaaatgataaaacataataagtcaaatgtaaataaaaatgca
gataattcatgccctaatataaaaaagttagtgttaccaggtgaagcagtattagaaaaa
aaagataaacccagattcttaaaggggagtgggttgtatgaagaagaagaaaatttttgt
gcatgtatattgggaagtgtaaattatataaataaattagtatatgtagaaccattgcga
ggaaaatatacgggttcagtaggtgatttattagttggaaaaataaaagatataaataat
gataaatgggttgtagaaattggatcatattgtagggccttattatcaataacacaaact
aatataagcttatttagtcaaagaatacgattatataatgatgttataaatatgattaat
atatacaaacccaatgatgttattgcatgtgaagttcaaagaatattaacagatggctgt
attattttacatactagatcatctatatatggtaaattatcgaacggaattttaattaca
gttccacaaacattagtacaaaatcagaagaagcacatctttgtattcccatgtaatgta
caaataattttaggaatgaatggatttatttggatttcttctccaattaaaaaatcgaaa
gacacaaacccaaacagtatcgatgaaaatattgaagagaataaatttgaagaagtagat
gatactactcgaaaaaatattagtatcattagtaatattattaaattattagccaaatat
catattaatattaattatgatattattactaaaatatatatgcaatatacttcgaataaa
agtaatacacccagttacattttaaaaccatatgtatctgattcttatctatttagttat
ttagagaattttactaaataa
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