Plasmodium vinckei vinckei: PVVCY_1200440
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Entry
PVVCY_1200440 CDS
T08061
Name
(RefSeq) regulator of nonsense transcripts 1, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03013
Nucleocytoplasmic transport
pvv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PVVCY_1200440
03015 mRNA surveillance pathway
PVVCY_1200440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_1200440
Enzymes [BR:
pvv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PVVCY_1200440
5.6.2.5 RNA 5'-3' helicase
PVVCY_1200440
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PVVCY_1200440
mRNA cycle factors
Common to processing body (P body) and stress granule
PVVCY_1200440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
PhoH
NPHP3_N
PIF1
nSTAND3
SRP54
AAA_22
AAA_16
Ribosomal_S24e
AAA
WKF
AAA_25
Motif
Other DBs
NCBI-GeneID:
19959585
NCBI-ProteinID:
XP_008623279
UniProt:
A0A449BVY8
LinkDB
All DBs
Position
PVVCY_12:complement(157044..160775)
Genome browser
AA seq
1243 aa
AA seq
DB search
MNRARNCSQLDIDNFCDLYNIVETKRDTINHKNKHNEASNFNELFDCELKNEMNVMKESS
HRKGPSEKKKNTQFVNQTNFKKNNNLSNYLCELPEKNTSNFDIDENRIHKLVPFSDACSD
MESYAMSWNESHLRGCSESSGGDRNRQENSRYGYKNVDKEKTNLKNEKIKKKLNKKKGKR
KDDDCYSQEIVQEYGEKKNKNLANIYGDSNDDSEEDELKYYRCRYCEIDSIDSVVQCNTC
ERWFCNGSYGTCGSHIVTHLVRSKHKEIKLHKNSLLGETILECYNCGCRNVFLLGFLPTL
EEGVVIIICRDPCLAYYISLNKKNDESLMKRNVSSQDEESEGETKIKECNLEKWQPIIED
RCFLEWLVNIPTKEEAEKKGKLITSVNVNKLEEFWKNKKDVYINELDLKILDDEPKKVKL
KYTDAIDYKLTFSPLIQLESNYDKSIKEGHKQTNVRIRWDVGLNKKRYAHFVYIKEESEL
RIVVGDELKISYVYPNGNIWSCEGHISRLNNNEEIALELKVLYNIDGPWNDNINTGFVVE
FVWKSTAYDRMQLALNEFAFNSFSLSGHLYHKLLGHDIIDEPINYSKKSNGNFSSSYKIV
NYSAPNLAPLNHSQIDAIQKSLNSPLSLIQGPPGTGKTLTCATLVYHMHKTKMGGKVLVT
APSNVAVDQLSVRIHRTGLKVVRLCARSRESVSSIADYLYLHNQVKLLKTDVGEELNKLL
ELKEEVGELSQKDENRLKKLILHAEYKILIEADVICTTCVGAMDKRLKKFRFNQVLVDEA
TQSTEPECLVPLVTGAKQIVLVGDHCQLGPIIVCKKAASAGLGKSLFERLVMLGITPFRL
EVQYRMHPCLSEFPSYVFYDGCLQNGITLKEREYPLKNFPWPNSKYPMFFYNSNGLEEMS
ASGTSYLNRSEAQNMEILVRALLNSGLKATQIGVITPYEGQRAYITSLFQKNISYQHCLD
IEVASVDAFQGREKDFILLSCVRSNKKLGIGFLNDPRRLNVALTRAKYGLIICGNAKVLS
RQHFISKEKLNSNETITNVNSVWINLLNQFKKKNLIVEGCLSNLKSITINIPAPIKQPSK
YINFDYFHDLKDINSKIYDKEINRYTRDYGNGKDNYKFKYQRANSLLSQNMSNSSICNES
VIDQDIYNYINERKGKNKYSLNSYISNFSQLSQSNGSITDEIPNFRGISRAESVEDSDFN
FNHISSNFNDTNFDSKIDLKNGDLFPYLFYQDSDNNQHNKSTQ
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgaatagggcaaggaattgtagccaactagatatagacaacttttgtgatctatacaat
atagtagaaacaaaaagggacacgataaatcacaagaataaacataatgaagcatctaat
tttaatgaattatttgattgtgaattaaaaaatgaaatgaatgtgatgaaagaaagtagt
cataggaaaggtcctagtgaaaaaaaaaaaaatacacaatttgtaaatcaaacaaatttt
aagaaaaataataatttaagtaattatttatgtgaattacctgagaagaatacatcaaat
tttgatatagatgaaaatagaatccataaattagtaccattttcagatgcatgttcagat
atggaatcatatgccatgtcatggaatgaatcacatctaagaggttgcagtgaatcaagt
ggaggtgataggaatagacaagaaaatagtagatatggctataaaaatgtagataaagaa
aagacaaatttaaagaatgaaaaaataaaaaaaaaattaaataaaaaaaaagggaaaagg
aaagatgatgattgttattcccaagagattgtacaagagtatggagagaaaaaaaataaa
aatttagcaaatatttatggagatagtaatgatgattctgaagaagatgaattaaaatat
tatagatgtagatattgtgaaatagattctatagatagtgttgtccaatgtaatacatgt
gaaagatggttttgtaatggatcatatggaacttgtggaagtcatatagttacacatcta
gttcgatcaaaacataaagaaataaaattacataaaaatagtttacttggtgaaacaata
ttagaatgctataactgtggatgtagaaatgtttttttattaggatttttacctacgtta
gaagaaggggtagtaattattatatgtcgagatccatgtttagcatattatatttcctta
aataaaaaaaatgatgaaagtttgatgaaaagaaatgtgtctagtcaagatgaagaaagt
gaaggagaaacaaaaataaaagaatgtaacttagaaaaatggcaaccaattatagaagat
agatgttttttagaatggctagtaaatatcccaacaaaagaagaagcagaaaaaaaaggt
aaattaataacatctgtaaatgtaaataaattagaagaattttggaaaaataaaaaagat
gtatatataaatgaattagatttaaaaatattagatgatgaacccaaaaaagttaaatta
aaatatacagatgcaatagattataaattaacattttcaccattaattcaattagaatct
aattatgataaatcaataaaggaaggacataaacaaacaaatgtaagaatacgatgggat
gtcggattaaataaaaaaagatatgcacattttgtatatattaaagaagaaagtgaatta
aggatagttgtaggagatgaattaaaaatatcgtatgtttatcctaatggtaatatatgg
agttgtgaaggtcatatatcaagattaaataataatgaagaaatagcattagaattaaaa
gtattatataatatagatggtccatggaatgataatataaatacaggttttgttgttgag
tttgtttggaaaagtactgcctatgatcgtatgcaattagctctaaacgaatttgccttt
aattcattttcattaagtgggcatttatatcataaactattagggcatgatataattgat
gagcctataaattatagtaaaaaatcaaatggcaatttttctagttcctataaaattgta
aattattctgcccctaatttagctccattaaatcattcacaaatagatgcaattcaaaaa
agtttgaactccccactttcattaatacaaggtccaccaggtacaggtaaaacattaaca
tgtgcaactttagtatatcatatgcataaaacaaaaatgggaggaaaagttttagttact
gctccaagtaatgtagctgtggatcaattatctgttcgtattcatagaaccggattaaaa
gttgtaagattatgtgctagaagcagagaatccgtatctagtatagctgattatttgtac
ttacacaatcaagtaaaattacttaagacagatgtaggagaagaattaaataaattatta
gaattaaaagaagaagtaggggaattatcgcaaaaagatgagaatagattaaaaaaatta
attttacatgctgaatataaaatattgatagaggcagatgtaatatgtactacatgtgta
ggagcaatggataaaagattaaaaaaatttcgttttaatcaggttttagttgatgaagca
acacaatcaactgaacctgaatgtttagttccattagttacaggagcaaaacaaatagta
ttagttggtgatcattgtcaattagggcctataattgtatgtaaaaaagcagcaagtgct
ggattaggaaaaagtttatttgaaaggcttgttatgttaggtattacaccttttaggtta
gaagtacaatatagaatgcatccttgtttaagtgaatttccatcttatgtattttatgat
ggatgtttacaaaatggtattacattaaaagaaagagaatatcctttaaaaaattttcca
tggcccaactctaaatatcctatgtttttctacaattctaatggtcttgaagaaatgtct
gcatctggtacaagctacttaaatagaagtgaagcacaaaatatggaaattttagtaaga
gctttattaaattcaggattaaaagctacccaaattggtgttataactccttatgaaggt
caaagagcatatattacttcactttttcaaaaaaacatatcttatcaacattgtttagat
atagaagttgcatctgtagatgcattccaaggaagagaaaaagattttattcttttatca
tgtgtaagatcaaataaaaagttaggtattggatttttaaatgatccaagaagattaaat
gttgcattaacaagagcaaaatatggattaataatttgtggtaatgcaaaagttttatct
agacaacattttatttctaaagaaaaattaaattccaatgaaacaattacaaatgtgaat
tcagtttggattaatttattgaatcaatttaaaaaaaaaaatttaattgttgaaggatgt
ttatctaacttaaagtcaatcacaattaatataccagccccaattaaacaaccatcgaaa
tatataaactttgattattttcacgacttgaaagatataaatagtaaaatatatgataaa
gaaataaatagatatacaagagattatggaaatggcaaagataattataaatttaaatat
caaagagctaattcacttttaagtcaaaatatgtcaaatagtagcatatgtaatgaatca
gtcattgatcaagatatttataattatattaatgaaagaaaaggaaaaaataaatattcc
cttaattcatatattagtaattttagtcagctatctcaatccaatggtagtataaccgat
gaaattccaaactttagaggaattagtagggctgaaagtgttgaggatagtgattttaat
tttaatcatataagtagcaattttaacgacaccaactttgatagtaaaattgatttgaaa
aatggagacctattcccatatctattttatcaagatagcgacaacaatcaacataataag
agtacccagtag
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integrated database retrieval system
