Plasmodium vinckei vinckei: PVVCY_1203140
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Entry
PVVCY_1203140 CDS
T08061
Name
(RefSeq) RNA and export factor binding protein, putative
KO
K12881
THO complex subunit 4
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03013
Nucleocytoplasmic transport
pvv03015
mRNA surveillance pathway
pvv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVVCY_1203140
09122 Translation
03013 Nucleocytoplasmic transport
PVVCY_1203140
03015 mRNA surveillance pathway
PVVCY_1203140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_1203140
03041 Spliceosome [BR:
pvv03041
]
PVVCY_1203140
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PVVCY_1203140
TREX complex
PVVCY_1203140
Spliceosome [BR:
pvv03041
]
Complex C
Other components
EJC/TREX
PVVCY_1203140
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PVVCY_1203140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
DUF7336
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
19959850
NCBI-ProteinID:
XP_008623544
UniProt:
A0A449BWQ6
LinkDB
All DBs
Position
PVVCY_12:join(1143277..1143304,1143447..1143502,1143632..1143700,1143839..1143934,1144056..1144124,1144232..1144295,1144468..1144562)
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AA seq
158 aa
AA seq
DB search
MREFRRYNKDDRQHRNHNRSHGKYGHSNNNGYKTNSRYNRINKQNGRNKYRNRDDRRNDT
ERNSHARVKISNLEYTITKDDLVELFSNVCKVVSAWINYDHTDRSDGTAVCIFESIEDAQ
KAIDKYDGSEIEGQSIKMEILHKSNYSYKKRYKSKCPW
NT seq
477 nt
NT seq
+upstream
nt +downstream
nt
atgagagagttcaggagatataataaagacgatcgtcaacatagaaatcataataggtcg
catggcaaatatggccattccaataataatggatataaaacgaatagccgctacaaccga
ataaataaacaaaatgggagaaataaatatagaaatcgcgacgaccggaggaatgataca
gaacgaaattcccatgccagagttaaaatatccaacttggaatatacaattacaaaagat
gatttagtggaattgtttagtaatgtatgcaaagttgtaagcgcatggataaactatgat
catacggatagatcggatggaacagcagtatgtatttttgaaagtatagaagatgctcaa
aaggcaattgataaatatgatggctcagagattgaagggcaatccattaaaatggaaata
ctacacaaatcgaattatagttacaaaaaaagatataaaagtaaatgcccttggtaa
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