Plasmodium vinckei vinckei: PVVCY_1300910
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Entry
PVVCY_1300910 CDS
T08061
Name
(RefSeq) poly(A)-specific ribonuclease PARN, putative
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVVCY_1300910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_1300910
Enzymes [BR:
pvv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
PVVCY_1300910
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
PVVCY_1300910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
19958285
NCBI-ProteinID:
XP_008621989
UniProt:
A0A449BXH9
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All DBs
Position
PVVCY_13:complement(374555..376834)
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AA seq
759 aa
AA seq
DB search
MLSVTNYFFKNVVLKEKTRFMKYNILKRTYSRITSVNINNWNNIHKEILSKIQESDFVSI
DVEYTGLHLKDERYISIDSSYEAHCYGAKSFFPCQIGITIAKKKDITTHDKCNEIKNNMI
KNKSIHNIKVFENNDKTNKVSPMKNEQEWDISPYCIYIFPKENKYFSVSTSTLIFLKENN
FDFNEWIFNGVSYLRPNEEDEKKKHIFEKIDGLKNLLNKCNTKKDYNKETEENKIDINKI
INEIENYKAVDDEDKQAVIEIVKKIGIWLSNDNETQFNNTAKDELKHASLSNSFYKSVDD
KNSISETFIANDKIFDNSHKPLHNFTEGDEKFSESSKDLNCGNNIEYDKCPLYIEIENPY
LRLLAHTLITKYFNSIFCISVKLNDKKNLAIYKTEKDSYNEQIKALQMEIEKINETIGVR
LLFDEIIKSNKILIGHNCFYDILHIYQTFYHELPDSIHAFKRKWTELFPYTIDTKYMNET
NEYLYSLNGPATLKGLCEYMASLISSSNDFDFFFNFLNGNIIDIQQCLIPFVKDEKRETN
SSGENCNEQPNGAKNNNDDENIGVEGKENDKNKLENNTSYKDDEKFYKDTNTLNDNANVL
KSDEHNAGYDSLLTCLLFIFQCHYILKKYNLSWKNIYFTNTNIMNENKKHFLDIFSNMCN
KIKIVKTQPNVVSLTSSENYEMARHFYMYDYPSYFKKWEIMKIWSPIWITLSKVDDQSCW
VIAKSDDDAKNIKMIYKMLQNPQFKLCTYEEYLNKFKSK
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgctaagtgttacgaattatttctttaaaaatgtggttttaaaagagaaaacgcgcttc
atgaaatataatatactgaaaagaacttactcaagaataacaagtgtaaatataaataat
tggaataatatacataaagaaatactaagtaagattcaagaaagtgattttgtttctatt
gatgttgaatataccggattgcatttaaaagatgagagatacatatccattgattcaagt
tatgaagctcattgttatggggctaaatcttttttcccctgtcaaataggaataacaatt
gccaagaaaaaggatataacaacccatgacaaatgtaatgagattaaaaataatatgata
aaaaataaaagcatacataatattaaagtttttgaaaataatgataaaactaacaaagtt
tcccctatgaaaaatgagcaagagtgggacatatcgccatattgcatatatatattccca
aaagaaaataaatattttagtgtctctacttcaacacttatatttttaaaagaaaataat
tttgattttaatgaatggatattcaatggtgtaagttatttaagaccaaatgaagaagac
gaaaaaaaaaaacatatttttgaaaaaattgatggattaaaaaacttacttaataagtgt
aacacaaagaaggattataataaagaaactgaagaaaataaaatagatataaataaaatt
attaacgaaatagaaaattataaagctgtagatgatgaagataaacaagcagttattgaa
atcgtaaaaaaaattggtatatggttatctaatgacaacgaaactcaatttaacaatact
gctaaggatgagctaaaacatgcaagcctatctaattcattctacaaaagtgttgacgat
aaaaatagtatctctgagacttttatagcaaatgataaaatttttgataatagccataaa
cctttgcataattttactgaaggggatgaaaaattttcagaaagttccaaagatttgaat
tgtggtaataacatagaatatgataaatgccccttatatattgaaatagaaaatccatat
ctcagattacttgcacacacattaattacaaaatattttaactcgattttttgtatatct
gttaaattgaatgataagaaaaatttagcaatatataaaacagaaaaagattcttataat
gaacaaataaaagcattgcaaatggagatagaaaaaataaatgaaactattggtgttaga
ttattatttgatgaaattataaaaagtaataaaatattaattgggcataactgtttttac
gatattttgcatatatatcagacattttatcatgaattgcccgattcgattcatgctttt
aaaagaaaatggacggaattatttccatatacaattgatacaaaatatatgaatgaaaca
aatgagtatttatattcattaaatggccctgcaacattaaaagggttatgtgagtatatg
gcgtcattaatttcttcaagtaacgattttgattttttttttaattttctcaatgggaat
ataatagacattcaacaatgtcttattccctttgtaaaagatgaaaaaagggaaacaaat
tcgtctggagaaaattgtaatgaacaaccaaatggcgccaaaaataataatgatgatgag
aatataggggtcgaagggaaagaaaatgacaaaaataagttagaaaataatacttcgtac
aaagacgatgaaaaattttataaagatacaaacacattgaatgataatgcaaatgtgcta
aagagcgatgaacataatgcaggctatgacagtcttttaacatgccttctttttatattt
caatgccattatattttaaaaaaatataatttatcatggaaaaacatttattttactaat
acaaatattatgaatgaaaataaaaagcattttttagatatattttcaaatatgtgcaac
aaaataaaaattgttaaaacacaaccaaatgttgtttcgttaacgagttcagaaaattat
gaaatggcaaggcatttctatatgtatgattatccaagttattttaaaaaatgggaaata
atgaaaatatggtcacccatttggataaccttgagtaaggtagatgatcaatcatgctgg
gtcatagcaaaaagtgatgacgatgcaaaaaatattaaaatgatttataaaatgttgcag
aatcctcaattcaagttatgcacatatgaagaatatttgaataaatttaaatctaaatga
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