Plasmodium vinckei vinckei: PVVCY_1405150
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Entry
PVVCY_1405150 CDS
T08061
Name
(RefSeq) splicing factor 3B subunit 3, putative
KO
K12830
splicing factor 3B subunit 3
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVVCY_1405150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pvv03021
]
PVVCY_1405150
03041 Spliceosome [BR:
pvv03041
]
PVVCY_1405150
03036 Chromosome and associated proteins [BR:
pvv03036
]
PVVCY_1405150
Transcription machinery [BR:
pvv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
PVVCY_1405150
Spliceosome [BR:
pvv03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
PVVCY_1405150
Complex B
PVVCY_1405150
Complex C
U2 SnRNP specific factors
PVVCY_1405150
Chromosome and associated proteins [BR:
pvv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
PVVCY_1405150
TFTC complex
PVVCY_1405150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
YQBQ
Motif
Other DBs
NCBI-GeneID:
19959041
NCBI-ProteinID:
XP_008622739
UniProt:
A0A449C0R3
LinkDB
All DBs
Position
PVVCY_14:join(1881554..1884784,1884870..1884962,1885103..1885249,1885373..1885474,1885606..1885743)
Genome browser
AA seq
1236 aa
AA seq
DB search
MPILYHLTLQKPTAITRTVYGNFSGPKAHEIIVAKGQVLELLRADKQGKLSVIVSKDIFG
IIRSLEIFRLTGSNKDYIAIGSDSGRLVILKYDDEKNDFIRVHCETYGKSGIRRIIPGEY
IAVDPKGRALMLCAIEKQKFVYILNRDNKENLTISSPLEAHKSHSICHAVVGLNVGFENP
MFVSIEQNYEILDKEVTNGNIQLTSNPNEDQQIMEYPKKGLCFWEMDLGLNHVIKKHTLP
IDITAHLLIPLPGGQQGPSGLIVCCENYLVYKKIDHDDIYCSYPRRLEVGEEKNISIVCW
TIHRIKTFFFILIQSEYGDLYKIEVNHEDGIVKEIICKYFDTVPIANSICVLKSGALFVA
AEFGNHFFYQFSGIGNDSNESMCTSNHPSGKNAIIAFKTQKLKNLYLVDQIYSLSPIIDM
KILDAKNSSLPQIYALCGRGPRSSLRILQHGLSIEELANNELPGKPKYIWTIKKDNLSEY
DGYIIVSFEGNTLILEIGETVEEVYDSLLLTNVTTIHINLLYDNSFIQVYDTGIRHINGK
IVQEWVSPKNKQINAATSNGSQIVVSLSGGELIYFEIDESHTLTEIFRKNINVEILCLSI
QQLQQNKLRASFLAVGCLDNVVRLLSIEKDQYFKQLSTYILPNNSSPQDICISEMKELGN
QKEHTILYLNIGLNTGVLLRSVIDPICGTLSNHYSKYLGAKSVKICHVQVNKNPALLVLS
EKTYLCYVYQGKYIYSPLNYDVLEYASSFYSEQCSDGYVAISGSSLRIFRFYRLGEVFSQ
NILHLTFTPRKIVPLPFPSLFYDNDTSLEIKRIKNIQMLAVIEADHNAYDENTQREIQKA
LRDIKLEGKGEEEEEEDEIPQDEPDNEEEELLYDRIGTPKAGAGKWGSCIKIINPINLQV
IDKVSLELEEAALSVCACELEALHCLIVGTTTNMTLKSRIVPSASLRVYTYDINYKLNLL
HITPIEDQPYCFCPFNGRVIVSVGNKLRIYALGKKKLLKKCEYKDIPEAIVSIKVSGDRI
FASDIRESVLIFFYDSNQNVIRLISDDIIPRWITCSEILDHHTIMAADKFDSVFILRVPE
EAKQEEYGIANKCWYGGEVISSSTKNRKMEHIMSFHIGEIVTSLQKIKLSPASSECIIYS
TIMGTIGAFIPYDNKEELELTQHLEIILRTEKHALCGREHIFFRSYYHPVQHVIDGDLCE
QFSSLPFDVQRKVASDLEKTPDEILRKLEDIRNKIL
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgcctatattatatcatctaactttacaaaaacccacagcaatcaccagaacagtgtat
gggaatttctcaggtcccaaagcacatgaaataatagtcgcaaaaggtcaagtattagaa
ttattaagagctgataaacaagggaaattgagtgttatcgtatctaaagatatatttgga
ataattcgaagtttagaaattttccgtttaactggcagtaataaagattatatagcaatt
ggtagtgactcaggaagattagtaattttaaaatatgatgatgaaaaaaatgattttatt
agagtccattgtgaaacatatggtaaaagtggcattagacggattatacctggtgagtat
attgctgtagatccaaaaggtagagctttaatgttatgtgctatagaaaaacaaaaattt
gtatatatattaaatagagataataaagaaaatttaactattagtagtcctttagaagct
cataagtctcattctatttgtcatgctgtagttggattgaatgttgggtttgaaaatcca
atgtttgtatcaatcgaacaaaattatgaaattttagataaagaagttacaaatggaaat
atacaattaacttctaatccaaatgaagatcaacaaataatggaatatcctaaaaaagga
ttatgtttttgggaaatggatctcggattaaatcatgtaattaaaaaacatacattacct
attgatattactgcacatttattaatacctttaccaggtggtcaacaaggacctagtggt
ttaattgtttgctgtgaaaattatttagtatataaaaaaatagatcatgatgatatatat
tgctcatatccaagacgattagaagttggtgaagaaaaaaatatatctattgtttgttgg
acaatacatagaattaaaacattcttttttatcttaatacaatctgaatatggtgattta
tataaaatagaagttaatcatgaagatggtattgtaaaagaaattatttgtaaatatttt
gatacagtacctatagctaactctatatgtgtattaaaatcaggagcattatttgtagca
gcagaatttggaaatcattttttttatcagttctctggcattggcaacgattccaatgaa
tctatgtgtacatctaatcatccatcaggaaaaaatgcaattatcgcatttaaaacacaa
aaactaaaaaatttatatttagtagatcaaatatattctttatcaccaattattgatatg
aaaatattagatgcaaaaaattcaagccttccacaaatatatgctttatgtggtagagga
ccaagatcctctttacgaatactacaacatggcttaagtatcgaagaactagcaaataat
gaattaccaggaaaacctaaatatatttggacaattaaaaaagataacttaagtgaatat
gatggatatattattgtaagttttgaaggaaatacattaatattagaaattggagaaact
gtagaagaagtatatgatagtttacttctaactaatgtaacaactatacatattaattta
ttatatgataattcttttatacaagtatatgatacaggaatacgacatattaatggtaag
atagtacaagaatgggtatcaccaaaaaataaacaaattaatgctgctacttcaaatgga
tcacaaattgtagtatcacttagtggtggtgaattaatttattttgaaattgatgaatca
catactttaacggaaatatttcgaaaaaatattaacgtcgaaattttatgcttatcaata
caacaattacaacaaaataaattaagagctagttttttagcagttggatgtcttgataat
gtagtacgtttactttcaattgaaaaagatcaatattttaaacaactatctacatatata
ttacctaataattcatcacctcaagatatttgtatatctgaaatgaaagagttgggtaat
caaaaagaacatactattttatatttaaatatcggattaaatacaggagtacttttaagg
agtgttatagatcctatatgtggtacattgagtaatcattattcaaaatatttaggtgct
aaatctgttaaaatctgtcatgtacaagttaataaaaatccagcacttttagtattgtcc
gaaaaaacatatctatgttatgtatatcaagggaaatatatttattccccattaaattat
gatgtactagaatatgcatcatctttttattctgaacaatgttcagatggttatgtagct
atatctggaagtagtttaagaattttccgattttatagacttggtgaagtttttagccaa
aatattttacatctaacatttacaccaagaaaaattgtcccattaccattcccttcatta
ttttatgataatgatacttctctagaaattaagagaattaaaaatatacaaatgttggct
gttattgaagcagaccataatgcatatgatgaaaatacccaacgagaaatccaaaaggca
ttacgtgatattaagctcgaaggaaaaggagaagaagaagaagaagaagatgagatacca
caagatgaaccagataatgaggaagaagaattattatatgatcgtataggaactccaaaa
gcaggtgcagggaaatggggatcctgtatcaaaattattaacccaataaacttacaagtt
atagataaagtatcattagaacttgaagaagcagctttaagtgtttgtgcttgtgaactt
gaagcattacattgtttaatagttgggactactactaatatgacattaaaaagtagaatt
gtcccatcagcatctttaagagtatatacatatgatataaattacaaacttaatttgttg
catattacacctattgaagatcaaccatattgtttttgtccatttaatggtagagttata
gtatcggttggcaataaattaaggatatatgcattagggaaaaaaaaattgttaaaaaaa
tgtgaatataaagatattcctgaagcaattgtttcaataaaagtttcgggagatagaatt
tttgcatctgacatcagagaatctgttcttatatttttctatgattcgaatcaaaatgtt
atacgacttatatctgatgatattatacctcgatggataacatgctccgaaattttggat
caccatactattatggctgcagacaagtttgattccgttttcatactgagggtacctgag
gaagcaaaacaagaggaatatggaatagccaacaaatgctggtatggtggagaagtaata
agtagttcaaccaaaaatagaaagatggaacacatcatgagttttcatattggcgaaatc
gtgacgtccttacaaaaaatcaaactatcccctgcgagcagtgaatgcataatatattcc
accatcatgggaaccataggagcctttattccgtatgataacaaggaagagctggaactg
actcaacatttggaaataattttgaggacagaaaaacatgctctttgcggaagagagcac
atattttttcgttcttattatcaccccgttcagcatgttattgatggtgatttatgtgaa
caattttcgagcctaccatttgatgttcaaagaaaagttgcatccgacttagaaaaaaca
ccagacgagattttaagaaaattagaagacataagaaataaaatactttaa
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integrated database retrieval system
