Plasmodium vinckei vinckei: PVVCY_1405260
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Entry
PVVCY_1405260 CDS
T08061
Name
(RefSeq) pre-mRNA-splicing factor SYF1, putative
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pvv
Plasmodium vinckei vinckei
Pathway
pvv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVVCY_1405260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvv03019
]
PVVCY_1405260
03041 Spliceosome [BR:
pvv03041
]
PVVCY_1405260
Messenger RNA biogenesis [BR:
pvv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PVVCY_1405260
Spliceosome [BR:
pvv03041
]
Complex B
Other components
Prp19-related factors
PVVCY_1405260
Complex C
PVVCY_1405260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
TPR_2
HAT_PRP39_N
Mad3_BUB1_I
ANAPC3
Motif
Other DBs
NCBI-GeneID:
19959030
NCBI-ProteinID:
XP_008622728
UniProt:
A0A449C0T1
LinkDB
All DBs
Position
PVVCY_14:complement(join(1924368..1924500,1924633..1924721,1924879..1925004,1925097..1925171,1925301..1927616))
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AA seq
912 aa
AA seq
DB search
MDELGNVYDCDLLFNNDDTTFGEDGNNCDDTVAWKNEENESYLKNIDFDIKNNMDKISTQ
YLFLYINTYKEKNIKNVKKLYNLKFYDIHLKKDEYSLLETEHNIVEYCINELINKENEKI
ENNSDDMEEEHKYYLLKIYETILKHFPYSFKIWYHYIKDSIEMISDIYYNNKKEYEKINK
IFENCLLYLYNFKSIYIMYIQFLYIQRNVKKIREVFNKSLQNICLNQHEDIWNYQLKFIS
KIDSKLINYEYIKRYVTIYPEQVIFLFNHYIKYKMHKQALSTFFYILNNDDINFDLGDKT
KYDLYKDIFNLINSSKVLNNDVMEILRKNLDIFKNYENITSIYILLANNFVYEGRWNKAM
DIYEEGISESYSINDFSVLFDNYIETLKVLIDLKIRGQGGNSIKLANKTNQDEETDESES
ENEMDISDDFIIDLYMDKINYLLDKRKIYIADIKLKNNKNNVYAWLSKIDVIDNENEKID
LFNQCLKFFKDNDYTGKLSDVYITYAYYYYNNNNYKESVNVFHKAIEDTNIRSLNEMANI
FCSWIELEILEKNYNEALQIARLSIDFNKSNNFDKKGLQIVSYNPDTTSIRKDNSNYGFK
NVQNKFNLKNSIKLVCLVLDMEINYGTVETALCMFDLLYHSKSITIKMVLSFANYLYEQK
YFNECFKVYEKAISIFHYPYLYPIYVNYINKYIERYKDKNISYVRELFKQAIYGTDNKTY
VPKEFSKYIFLMYISFEENYGFLKKSLSIYKEAIPFLEEQDKIKFYKIFISKISKSFGIH
KAREAFEEAIQTLTDDQAREICLLYIDMEYKLNEYDRVRALYVYTAQFTNPLKFPKFFQD
WREFEALYGNEHTFRDMIRIKRSVRSMFTNSNSASFKDKHEETEEGKIEDTKRKLMEIIE
NETAENKKLKKI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattagggaatgtatatgattgtgatttgctttttaataatgatgatacaact
tttggggaagatggaaataattgtgacgatacagtagcatggaaaaatgaggaaaatgaa
agctacttgaaaaatatcgactttgatataaaaaataatatggataaaatatcaacacaa
tatttatttttatatataaacacatataaagaaaagaatataaaaaatgtaaaaaaatta
tataatttaaaattttatgatatacatttgaaaaaagatgaatactctctgttggaaacc
gagcacaacattgtagagtattgcattaatgagctgataaataaagaaaatgaaaagatt
gaaaataatagtgatgatatggaggaagagcataaatattatttattaaaaatttatgaa
acaattttaaaacattttccttacagctttaaaatatggtatcattatataaaggatagt
attgaaatgattagtgatatatattataataataaaaaagaatatgaaaaaattaataaa
atttttgaaaattgtcttttatatttatataattttaaaagtatatatattatgtatata
caatttttatatattcaaagaaatgtaaaaaaaataagagaagtttttaataaatcttta
caaaatatttgtctaaatcaacatgaagatatatggaattatcaattaaaatttatatca
aaaatagatagtaaattaattaattatgaatatataaaaagatatgtcacaatatatcct
gaacaagtcatatttttatttaatcattatattaaatataaaatgcataaacaagcttta
agcacatttttttatatattaaataatgatgatataaattttgatttaggagataaaact
aaatatgatttatataaagatatatttaatttaattaattcatcaaaagtgttaaataat
gatgttatggaaattttaagaaaaaatctggatatttttaaaaattatgaaaatattaca
tcaatatatatattattagctaataattttgtatatgaagggagatggaataaagctatg
gatatatatgaagagggaatatctgaatcatattctattaatgatttctctgtacttttt
gataattatatagaaacattaaaggttttgatagatctcaaaatacgaggccagggtgga
aattccattaagctagccaataaaactaaccaagatgaagaaacggatgaaagtgaaagt
gaaaatgaaatggatatttctgacgattttattattgatttatatatggataaaataaat
tatttgttagacaaaagaaaaatatatattgcagatataaaacttaaaaataataaaaat
aatgtatatgcatggttaagtaaaattgatgttatagataatgaaaatgaaaaaatcgat
ttatttaatcaatgtttaaaattttttaaagacaatgattatactggaaaattaagtgat
gtatatattacctatgcttattattattataataataataattataaagaatcagtaaat
gtttttcataaagctatagaagatacaaatataagaagtttaaatgaaatggcaaatata
ttttgttcatggatcgaattagaaatattagaaaaaaattataatgaagcattacaaatt
gctagattatccatcgattttaataaaagtaataattttgataaaaaaggattacaaata
gttagttacaatcctgatacgacatcaatcaggaaggataattccaattatggctttaaa
aatgtacaaaataaatttaatttaaaaaattctataaaattagtatgtttagtattagat
atggaaataaattatggaactgttgaaacagctttatgtatgtttgatttattatatcat
tctaaaagtattactattaaaatggttttgtcatttgctaattatttatatgaacaaaaa
tattttaatgaatgctttaaagtatatgaaaaggctatttctattttccattatccatat
ttatatccaatttatgttaattatattaataaatatattgaaagatataaagataaaaat
atttcgtatgtacgtgaattatttaaacaagccatatatggaacggataataaaacatat
gtccctaaagaattttcaaagtacatttttttaatgtatatttcgtttgaagaaaattat
ggatttctgaaaaaatctttaagtatttacaaagaggctattccatttttggaggagcaa
gataaaattaaattttacaaaatatttatttcgaagatatccaaatcgtttggaattcac
aaagctagagaagcatttgaagaggctattcaaacgctgacagatgatcaagctagagaa
atttgtttgttgtatattgatatggaatacaagttaaatgaatatgatcgagtaagagca
ctttatgtatatactgctcagtttacaaatccattgaaattccccaaatttttccaggat
tggagagaatttgaggcattgtatggaaatgagcacacatttagagatatgataagaatt
aaaagaagtgtccggagtatgtttacaaattcaaatagtgcttcatttaaggataagcac
gaggaaacagaagaaggaaaaatagaagatacgaaaagaaaattaatggaaattattgaa
aatgaaacagctgaaaataaaaaattaaaaaaaatataa
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