KEGG   Pseudomonas vanderleydeniana: HU752_013185
Entry
HU752_013185      CDS       T07587                                 
Name
(GenBank) RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
pvw  Pseudomonas vanderleydeniana
Brite
KEGG Orthology (KO) [BR:pvw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:pvw03016]
    HU752_013185
Enzymes [BR:pvw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     HU752_013185
Transfer RNA biogenesis [BR:pvw03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    HU752_013185
 Prokaryotic type
   tRNA splicing ligases
    HU752_013185
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: QXI30830
UniProt: A0A9E6PQC5
LinkDB
Position
2910805..2912040
AA seq 411 aa
MKNMQDQTYTLLEVANGKPIKLWTQGVPVEPEARQQLMNTAKMPFIFKHMAVMPDVHLGK
GSTIGSVIPTVGAIIPAAVGVDIGCGMIAACTSLTASDLPDNLQGLRSAIERAVPHGRTS
PRSGRDKGAWEDVPDVADLAWSALEPRFKAIIDKYPKLKNANHRKHLGTLGSGNHFIEVC
LDEANRVWFMLHSGSRGVGNAIGNLFIELARADMRGHIANLPDRDLAYFEEGSQHFDDYV
EAVAWAQDFARQNRAVMMQAVIAATRQVIRKPFDVALEAVNCHHNYVQKERHFGEEVLVT
RKGAVSAKKGELGIIPGSMGARSFIVRGLGNEESFCSCSHGAGRVMSRTKAKQMFTVEDQ
IRATAHVECRKDEAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq 1236 nt   +upstreamnt  +downstreamnt
atgaagaacatgcaagaccagacctacaccctgctcgaagtcgccaacggcaaaccgatc
aaactctggacccagggggttccggtcgagcccgaggctcgccagcaattgatgaacacc
gcgaagatgccgttcatcttcaagcacatggccgtgatgcccgacgtgcacctgggcaag
ggctcgaccatcggtagcgtgatcccgacggtgggcgcgatcatcccggcggcagtgggc
gtggatatcggttgcggaatgattgccgcgtgcacctcgctgaccgccagcgatctgccg
gacaacctgcagggcctgcgtagcgccatcgagcgggcggtgccccacggtcgtaccagt
ccacgcagcgggcgtgacaagggcgcctgggaagatgttccggacgtggccgacctggcc
tggtcggcactggagccgcggttcaaggccattatcgacaagtacccgaagctgaagaac
gccaaccatcgcaagcacctgggaaccctcgggtcgggtaaccacttcatcgaggtttgc
ctcgatgaggcgaaccgggtctggttcatgctgcacagcggttcgcggggtgtcggtaac
gccatcggcaacctgttcatcgaactggcgcgggccgatatgcgtgggcatatcgccaac
ctgccggaccgcgacctggcgtacttcgaggaaggtagccagcacttcgatgattacgtc
gaggcggtcgcctgggcgcaggacttcgcccggcagaaccgtgcggtgatgatgcaggcg
gtgatcgccgccacgcgccaggtgattcgcaagccattcgacgtggcgctggaggcggtg
aactgccaccacaactacgtgcagaaggagcggcatttcggcgaggaagtactggtgacc
cgcaagggcgcggtatcggcgaagaagggggagctggggatcattcccggctcgatgggc
gccaggagcttcatcgttcgtgggttgggtaacgaggaatcgttctgctcctgcagccac
ggtgccgggcgagtcatgagccgtaccaaggccaagcagatgttcaccgtcgaggaccag
atccgcgcgacggcccatgtcgagtgccgcaaggacgaggcggtgatcgacgagatcccg
atggcctacaaggacatcgaccaggtgatgcacgcccagcgtgaactggtggaagtgctg
cataccttgcggcaggtggtttgtgtgaaggggtag

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