Pseudomonas vanderleydeniana: HU752_024040
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Entry
HU752_024040 CDS
T07587
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pvw
Pseudomonas vanderleydeniana
Pathway
pvw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU752_024040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvw03019
]
HU752_024040
03009 Ribosome biogenesis [BR:
pvw03009
]
HU752_024040
Enzymes [BR:
pvw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU752_024040
Messenger RNA biogenesis [BR:
pvw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU752_024040
Ribosome biogenesis [BR:
pvw03009
]
Prokaryotic type
rRNA helicases
HU752_024040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QXI26967
UniProt:
A0A9E6TQZ7
LinkDB
All DBs
Position
complement(5400499..5402163)
Genome browser
AA seq
554 aa
AA seq
DB search
MTQEIGGFAALELHPSIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFNAMPES
RQTVLFSATLPQSIRAIAERHLKEPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAILDSRIKKLTNSLAPLVTEAEATHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGERPERSGDRPERERRAPMPLAEGRARC
RTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLDRLLTKLKDTR
VAGKQLKLRRYRED
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccagtatcgtcgctgca
gtagtcgccaccggctacgaagagccttcggctattcagcagcagtcgatcccgatcatc
cttgccggtcacgacatgattggtcaggcacaaaccggtaccggtaaaacggccgcgttc
gccctgcctatcctgcaccgcatcgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagttgcaaccgctttcgaaacctacgccaagcag
atgcctggcgtgactgtcgtggccgtctacggcggtgcgccgatgggcccgcagttgaaa
gcaatccgtaatggcgcacagatcgttgtcgccaccccaggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtcctggcaaccgtgaaccacctggttctcgacgaagcggacgag
atgctcaagctcggcttcatggatgacctggaagtcatcttcaatgccatgcctgaaagc
cgtcagaccgttctgttctcggccaccctgccgcagtcgatccgtgcgatcgccgagcgt
cacctcaaggagccgaaacacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gagcaggcccacctgctggttcacgccgaccagaagacctcggccgtgctgagcctgctg
gaagtcgaggacttcgacgcgctgatcatgttcgtgcgtaccaagcaggccaccctggac
ctggccagcgccctggaagccaaaggctacaaggctgctgccctgaacggtgacattgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggacggtcgcctggacatcgtcgtc
gccaccgacgtggcggcccgtggtctggacgtaccgcgtatcacccacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgtacaccgtatcggccgtaccggtcgtgccggt
cgcgaaggccgtgcgctgctgctggtgactccgcgtgagcgccgcatgctgcaggtgatc
gagcgtgtgaccggtcagaaagtggctgaagtgcgtctgccggacgcccaggccattctc
gactcgcgtatcaagaagctgaccaacagcctggctccgctggtgaccgaggccgaagcg
actcacggtgatctgctcgaccgcctgaccgccgacatcggttgcagcccgcgcgccttg
gccgcggccctgctgcgcaaggccaccaatggccaggcgctgaacctcgcggcgatcgag
aaagagcgtccgctggtgccgaacagcgccccgcgtggcgagcgtccggagcgttccggc
gatcgtcctgagcgcgagcgtcgcgcgccaatgccgctggctgaaggccgtgcccgttgc
cgtaccgcgctgggtgcgcgtgatggtatcgcggcgaagaacctgctgggcgccatcctc
aacgaaggtggcctggcacgtgaagccattggtcgcatccaggtgcgtgacagcttcagc
ctggtggaactgcctgaagaaggtctggaccgcctgctgaccaagctcaaggacacccgc
gttgccggcaagcagctcaagctgcgtcgctaccgcgaggattga
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