Pseudomonas vanderleydeniana: HU752_030540
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Entry
HU752_030540 CDS
T07587
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pvw
Pseudomonas vanderleydeniana
Pathway
pvw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HU752_030540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvw03019
]
HU752_030540
Enzymes [BR:
pvw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HU752_030540
Messenger RNA biogenesis [BR:
pvw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HU752_030540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QXI28170
UniProt:
A0A9E6TSH2
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All DBs
Position
6783041..6784897
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AA seq
618 aa
AA seq
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MSFASLGLSEALVGAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQIQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLASKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITTGAWEQVLVFTRTKHGANRLAEYLDKHGLSAAAIHGNKSQNARTKALADFKAGEI
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQKIADGDLMGFDASAVEAEKPEVRERPEGRNPRNARAPRGENANGGGGGSG
RKDKGKDKGGKEKSANSGRGERPAREQKPREQQPQQRQIPRPAPDRDPEEFLDDDVDNFG
NRVDYVPQAAKPQGRGRRPGGGGQGAARGGATQGQGRQGGQRGSNGAGASAGSGAPKRNG
RNGAARDGQPRRDDSRSRRPARDDQSFRQEPAVKSPRENQPKIMHKESKIDRSLTPEQLD
QLPNRPRGEKPALLTRNR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttggtcggcgccatcgaggctgccggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagacaggtactggtaaaaccggcggtttcgccctcccgattctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaacca
cgcgttctggtcctgaccccgacccgcgaactggccgcccaggtgcacgacagcttcaag
ctctatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggtgtcggcatgaac
ccgcagatccaggccatggcccgtggcgtcgacgtgctcgtcgcttgcccgggacgcctg
ctggacctggccggacaaggcagcgtcgacctctcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggcttcgtccatgatgtgaagaaagtcctcgcacgg
ctgccggccaagcggcagaacctgctgttctcggcgaccttctccaaggacatcacggac
ctggccagcaagctgctgcacaacccggagcgcatcgaggtcacgccgccgaacaccacg
gtcgagcgtatcgagcagcgtgtgttccgcctggcggccagccacaagcgtgccctgctg
gcccacctgatcaccactggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgagcgctgcggcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccggcgaaatc
cgtatcctggtcgccaccgatatcgcggcccgcggcctggacatcgaccaactgccgcac
gtggtcaacttcgaactgccgaacgtcgatgaagactacgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggcgaggcgatctccctggttgccccggacgaagagaagctg
ctgaaaagcatcgagcgcatgaccaggcagaagatcgccgacggcgacctgatgggcttc
gatgccagcgccgtggaagcggaaaaaccggaagtgcgcgagcgtccggaaggccgcaac
ccgcgcaacgcccgcgcccctcgtggcgagaacgccaacggcggcggtggtggcagcggc
cgcaaggacaagggcaaggacaagggcggcaaggaaaagtcggcgaacagtggtcgcggc
gagcgtccggcccgcgagcagaaacctcgcgagcagcagccccagcagcgccagatcccg
cgcccggcgccggatcgtgacccggaagagttcctcgatgatgacgtggacaacttcggt
aaccgtgtcgactacgtaccccaggccgccaagccacagggccgtgggcgtcgtcctggc
ggtggcggacaaggcgcagcccgtggcggtgccacccagggccagggccggcagggtggt
cagcgtggcagcaatggtgcaggcgccagcgctggctctggcgcgccgaaacgcaatggt
cgcaacggcgcagcgcgtgatggccagccgcgtcgtgatgactcgcgcagccgtcgcccg
gcccgggacgaccagtcgttccgccaggagccggccgtgaagagcccgcgggaaaaccag
ccgaagatcatgcacaaggagtcgaagatcgatcgctccctgacgcctgagcagttggac
cagttgccgaaccgcccacgcggcgagaaaccggcgttgctgacccgcaaccgctga
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