Plasmodium vivax: PVX_003945
Help
Entry
PVX_003945 CDS
T01073
Name
(RefSeq) eIF-4A-like DEAD family RNA helicase, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pvx
Plasmodium vivax
Pathway
pvx03013
Nucleocytoplasmic transport
pvx03015
mRNA surveillance pathway
pvx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVX_003945
09122 Translation
03013 Nucleocytoplasmic transport
PVX_003945
03015 mRNA surveillance pathway
PVX_003945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvx03019
]
PVX_003945
03041 Spliceosome [BR:
pvx03041
]
PVX_003945
Enzymes [BR:
pvx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVX_003945
Messenger RNA biogenesis [BR:
pvx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PVX_003945
Spliceosome [BR:
pvx03041
]
Complex C
Other components
EJC/TREX
PVX_003945
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PVX_003945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
5472280
NCBI-ProteinID:
XP_001613028
UniProt:
A0A1G4GSV3
A5KBQ1
LinkDB
All DBs
Position
4:475002..477548
Genome browser
AA seq
473 aa
AA seq
DB search
MATMDHSVQDELVDYEDDENILDAKDVKGTLDNSLLNNNNKGVNENGAMRGSYATVHTGG
FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ
LETNDGKDIKEEKEMNNSAGSNNIGGDLTNGSGASKNKFVRCLGLAHTRELAYQIKNEFD
RFSKYLKGVRCEVVYGGISMSKHIKMFKEEGIPHIIIGTPGRILALIREKYLLTDKIQHF
VLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDD
EAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFP
SIAIHGGLDQQERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYLH
RVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggaccacagcgtgcaggacgaactcgtagactacgaagacgacgaaaac
atattagatgccaaggatgtcaagggcactttggacaacagtcttttaaacaataacaac
aagggggtgaatgagaatggggcgatgcggggcagctatgccacggtgcacacgggaggg
tttaaggacttttttttgaagccggagttgcttagggcgataagcgagagcggcttcgag
cacccctcggaggtgcagcaggagaccatccccgcggccatcacgggcacggacatcctc
tgccaggcgaagagtggaatgggcaaaacggccgtgttcgtgctgtccatcctgcagcag
ctggagacgaacgacgggaaggacataaaggaggagaaagaaatgaacaacagcgcgggc
agcaacaacatcggaggggacctgaccaacggcagtggtgcgtccaaaaataaattcgtg
agatgcctcggactggcacacacaagagagttagcctaccaaattaaaaacgaattcgat
cgatttagtaagtacctgaaaggggtccgttgcgaagtcgtctatggaggaatctccatg
agcaagcatataaagatgttcaaagaggaaggcatcccacatattattataggaacccca
ggacgtatcctggcactcataagagaaaaatatttattaacagataaaattcaacacttt
gttctggatgaatgtgataaatgtttggaaaaattggacatgagaagtgacgtgcagaag
atttttatttccactcctttgaagaagcaggtcatgttcttctctgccaccatggcaaaa
gaaatgagagatgtatgcaaaaagttcttgcaaaatccggtggaaattttcattgatgat
gaagctaaattgaagctacacggattgctgcaacactatgtgaagttgcaagaaaaggat
aagacgagaaagctaattgaaattctggacgccttagaatttaaccaagttatcattttt
gtaaaatctgtcacaagggcaatcaccttggataagttactgaccgaatgcaacttcccc
tccattgccatccatggtggccttgaccaacaggagagaattgaacgatatgataaattt
aaaaagtttgaaaatcgaattttagtttccacggatttgtttggaagaggtattgacatt
gagcgagtgaacattgtcatcaattatgacatgccagaaaattcagactcctatctgcac
agagtcggtcgggctggtcgatttggtaccaagggactcgccgttacgttcgtttcttct
caagaggatacattagcgttgaatgaggtgcagacccggtttgaagttgccatttcggag
atgcccaacaagatcgactgcaatgagtacattaaccagtaa
DBGET
integrated database retrieval system
