Plasmodium vivax: PVX_113270
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Entry
PVX_113270 CDS
T01073
Name
(RefSeq) ATP dependent RNA helicase, putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pvx
Plasmodium vivax
Pathway
pvx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVX_113270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvx03019
]
PVX_113270
03041 Spliceosome [BR:
pvx03041
]
PVX_113270
03009 Ribosome biogenesis [BR:
pvx03009
]
PVX_113270
03016 Transfer RNA biogenesis [BR:
pvx03016
]
PVX_113270
Enzymes [BR:
pvx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PVX_113270
Messenger RNA biogenesis [BR:
pvx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PVX_113270
Spliceosome [BR:
pvx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PVX_113270
Complex C
U4/U6.U5 tri-SnRNP related factors
PVX_113270
Ribosome biogenesis [BR:
pvx03009
]
Eukaryotic type
Pre-60S particles
Helicases
PVX_113270
Transfer RNA biogenesis [BR:
pvx03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PVX_113270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
nSTAND3
Motif
Other DBs
NCBI-GeneID:
5475345
NCBI-ProteinID:
XP_001616046
UniProt:
A5K1L9
LinkDB
All DBs
Position
11:complement(1946384..1951781)
Genome browser
AA seq
1387 aa
AA seq
DB search
MSGGNIDELFNVFEENDLVDNISTKDEAGERRGAGVPLDNHRQGEVNEGTLGKMHTAKGA
VGGETHPGGENERGTHPGEGDAGGGGQGDAKGEAEPNAQSNAQPRSAPSAPMGTPQINVE
NLISCKKRDQKVQSQIKEEIYNEIQNVDGTTRAAGSKVRKLNGEQSGQGGQGSQSGQSGE
DGRSGQSGEDGRSGQNGDSHCDANEPVEETLIENSKTINNDDVLVLEEFRSDVNCIHKCI
RPRSYVHNKLSETLTPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIA
LGLRDKQRVIYTSPIKALSNQKYRDLSEEFKDVGLITGDISINTDASIIVMTTEILRSML
YRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWV
SSIKSQACHIVYTDYRPTPLQHYIYPTSSESVFLICDENKDFKKNNFIKAVNAIKEKMNL
SEDGQHQNGNNKHQRRGKKNIHDIEKIVQMCHSRNYTPLIIFAFSKKECEINATSMHKVD
LTDDTEKEVIKELYENAIQILADDDRALPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIM
FQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGVEKRLITSGEYIQMAGRAGRRGLD
DRGIVIIMLDTPLHWREAEKLFVGEANRLVSQFHLGYNMILNLLRIEGIRPEFMIERSFI
QYQMKKNLFQKILAKKRVEEKIKEIFNQLTSVYLDGDDQEISRENLLKKIMDHNYECSSG
GAEQLGATELGSTPQGGQDGSAKGGIPPGVDAEMGIDEGGIDANDSTYIEHTADATTCDQ
LKHYHTVFSCISNYYILRNKLVELGETYRNILTARKNITPYLAMGRLLYLVEDDLIWGWA
ICIEGKIVERAHGGRAAGRHSAARSANVNAANSAHSANAATTATAANATDGDVLLVDCLV
PYSQSRKRKLAQSDDEEEEDAQKEFEPATERMKAKWKLITFHIKCIYQISAVVLNLEKPF
DKKNEDQIMNAKMKYNTMVTCLSGEKNIPVINPHQMEIKEEAFLKVVKNINHYEHLLNKN
KLLNSRNLHKYYQLYNMYIALQFEKNLLEANIEKCRFIVLKKELKNMLVLLQGLNYIEIS
HNREGEAAQQGEAVQKLRGEEANGEELNGEGTHGEGTHGEKAESEEVKSTHETHQNGRSS
GGDPPPSEEKSYVVTMKGQIASAILSVDELVIAELFFSNFFSKYNYDYICAFLSCFVYDE
SSNKEIAISDPVLVEGYQQIIKTATHVSNKMNECGMNINLKDYLDKFKSAIMPIVLQWVR
GYSFMEILTDSQIYEGSIIRTLRRLDELLRQMICAFRGINNDSMCDILTEATKKLRRGIP
FSPSLYL
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggtaacatcgatgagctatttaacgtgtttgaggaaaacgaccttgtagat
aatatttccacaaaagatgaagcgggcgaaaggaggggcgccggagtccccttggacaac
caccgtcagggggaagtgaacgagggtacactcggtaagatgcatactgcgaaaggcgca
gtgggaggagagacacaccccggtggggaaaacgaaaggggtacccaccctggagagggt
gatgcagggggaggcggacaaggagacgccaaaggggaagcggaaccgaatgcgcagtcg
aacgcgcagccgcggagcgctccgtccgcccccatggggaccccccaaatcaacgtcgaa
aacctcatttcgtgcaaaaagagggaccagaaggtgcagagccaaatcaaggaggaaata
tacaacgagattcaaaacgtcgacggcacgaccagagctgcaggcagcaaggtgaggaag
ctgaacggggagcaaagcgggcaaggcgggcaaggcagccaaagcggtcaaagcggcgaa
gacggccgaagcggccaaagcggcgaagacggccgaagcggccaaaatggagacagccac
tgcgacgcaaacgaacccgtggaagaaacgctaatcgaaaacagcaaaacgatcaacaac
gacgacgtgctcgtgctggaggagttccgcagcgacgtcaactgcatccacaagtgcatc
cggccgaggagctacgtgcacaacaagctcagcgagaccctcaccccagccaggacctac
aaattcgaattagacactttccagaagaaatccattgagtgtctggagagaaacgaaagc
gtcctcgtctcagcacacacctccgccggaaaaacggtcatcgcagagtacgccatcgcc
ctagggttaagggataagcaaagagttatctacaccagccccataaaagcgttaagcaat
caaaagtacagagacctgagcgaagaatttaaagacgtcgggttaatcacaggagatatt
tcaataaatacggatgcttccatcatcgtcatgacgaccgaaattttgagatcgatgctg
tatagagggtcttccctaacgaaggaagtaaaatgggtcattttcgacgaaatccattac
atgcgagacagagatagaggagtcatctgggaggaaaccatcattttactaccactcatg
gtgcgctttatcttcctaagtgcgaccatcccaaatggtattcaattcgctgaatgggta
agcagcatcaaaagccaagcttgccacattgtgtatacggactatcgacccacaccattg
cagcattatatctacccaacatctagcgaaagtgtttttctcatttgtgatgaaaataaa
gattttaaaaaaaataattttataaaagctgttaatgctattaaggaaaaaatgaaccta
tctgaagatgggcaacaccaaaatgggaacaataagcatcagagaaggggaaaaaaaaat
atccacgacattgaaaaaattgtgcagatgtgccactcacgtaattacacccccctcatc
atttttgcattttccaaaaaggagtgcgaaataaatgccacctccatgcataaggtggat
ctgacagacgacacagagaaggaggtcataaaagagttgtacgaaaatgccattcaaatt
ttagccgatgatgatagggccctaccgcaggtccagtttattcttcccctcctcttgaga
ggcataggaatccatcatggtggcctactacctatcattaaagaaataatcgaaattatg
tttcaggaatcgctactgaaagttttattcagcacagaaactttctccatgggaattaac
atgcctgccaaaacggtcgtttttacgtccctaacaaaatttgatggggtagaaaaaagg
cttatcacatcgggggagtatattcaaatggctggcagagctggcagacgtgggttagac
gatagaggaatcgttatcatcatgttagataccccactgcactggagagaggcggaaaag
ctattcgtcggggaagccaaccgactagtcagtcagttccacctgggctacaacatgatt
ttaaatctactcagaatagaaggcataagaccagagtttatgatcgagcgatccttcatt
caataccaaatgaagaaaaacctcttccagaaaattttggccaaaaaaagagtcgaagaa
aaaattaaagaaatttttaaccaactgactagtgtctacctggatggggatgaccaggag
atcagcagagaaaatctcctgaagaaaattatggaccataattatgagtgctcctctggg
ggggcggagcaactgggtgcgactgaattggggagcactccacagggcggccaagatggc
agcgcgaaggggggtatacctccaggggtggacgcagaaatgggcatcgacgaggggggc
atcgacgcgaacgatagcacctacatcgaacacaccgctgacgccaccacctgcgaccag
ctcaaacactaccacacggtgttctcctgcatttccaattactacatcttgaggaacaag
ctggtcgagctgggcgaaacctacaggaacatactgacggccaggaagaacatcaccccg
tacctggccatgggcagactgctctacctggtggaggacgacctgatatggggctgggcc
atatgcattgagggaaagattgtggagcgggcgcacgggggccgcgccgccgggcgccac
agcgccgccaggagcgcaaacgtaaacgcggcaaactcggcacactcagcaaacgccgct
accaccgctaccgccgccaacgctaccgatggcgacgtgctgctcgtggactgcctagtg
ccctacagccaaagcagaaagaggaaacttgcccagagtgacgacgaggaggaagaagac
gcacagaaggaattcgagccagccaccgagaggatgaaggccaaatggaaactcatcacc
tttcacatcaagtgcatttaccaaatttcagctgtcgtgttaaatctagaaaaaccattt
gataaaaaaaatgaagaccaaattatgaacgccaaaatgaagtacaacaccatggtgacc
tgcctcagcggagaaaaaaacatcccagtcattaacccgcaccaaatggaaatcaaagag
gaagccttcctgaaagttgtaaaaaatattaaccattatgagcatttgctaaataaaaat
aaattacttaacagtagaaatctgcataagtattaccagctctataacatgtatatcgcc
ttgcagtttgaaaagaaccttttggaggccaacatagaaaagtgccgattcatcgtcttg
aagaaggaactcaaaaatatgctcgtccttctgcaaggcctcaactacatcgaaatttcg
cacaaccgggaaggggaggccgcgcagcagggggaagccgtgcagaaactcaggggggag
gaagccaatggggaggaactcaatggggaaggaacccatggggaaggaactcatggggag
aaggccgaatcggaggaagtcaaatcaacgcatgagacccaccagaacggacgcagcagc
gggggagacccccccccgagcgaggaaaaaagctacgtcgtgaccatgaaaggacaaatc
gccagtgccatcctcagcgtagacgaattagtaattgcggagttattcttctccaatttt
tttagtaaatacaattacgactacatatgtgccttcctctcctgctttgtctacgacgaa
tcttcaaacaaagaaatcgccatcagcgacccagttcttgtggagggctaccagcagata
attaaaaccgccacgcacgtttcaaataaaatgaacgaatgcggaatgaacattaatttg
aaggactatctcgacaagttcaagtccgccatcatgcccatcgtcctgcagtgggtgcgc
ggctactccttcatggagattctcaccgactcgcagatatacgaggggtctatcatacgg
acgctcaggcgcctggacgaactgctcagacagatgatctgcgcgttcagaggaatcaac
aacgacagcatgtgcgacattttgacggaggcgaccaaaaagctgcgacgcggcatcccc
ttctccccctctctgtacctataa
DBGET
integrated database retrieval system
