Pistacia vera (pistachio): 116105789
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Entry
116105789 CDS
T07386
Name
(RefSeq) uncharacterized protein LOC116105789
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116105789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116105789
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116105789
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
116105789
Messenger RNA biogenesis [BR:
pvy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
116105789
DNA repair and recombination proteins [BR:
pvy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
116105789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-GeneID:
116105789
NCBI-ProteinID:
XP_031248057
LinkDB
All DBs
Position
Unknown
AA seq
901 aa
AA seq
DB search
MESTLKKFFGYSEFRPYQKEVIHQIIDKRDCLVVMATGSGKSLCYQLPPLLTGKTAVVVS
PLISLMQDQVMSLKQRGIKAEYLGSAQTDPTVQTKAETGHFHLLFMTPEKACLIPISFWS
KLLKVGISLFAVDEAHCISQWGHDFRVEYKQLDKLHDTLMDVPFVGLTATATEKVRNDIM
NSLKMKDPYVAIGSFDRKNLFYGVKVINRGQSFVDELVKEISVFVANAGSTIIYCTTIKD
VEQIFKALLEVGIEAGMYHGQMGSKAREKSHRLFITDELRVMVATVAFGMGIDKPDIRHV
IHYGCPKSLECYYQESGRCGRDGIASACWLYFARSDFAKAEFYCGETQTENQRKAVMESL
LAAQHYCLLTTCRRKLLLNHFGEIYSADKCGNCDNCTILKRERDMSKESYILMACIQACG
GNWGLNMPIDVLRGSRSKKVLDALFDKLPLHGLGRDHSSNWWKALAYQLISSGYLMETVK
DIYRTVSVSQKGKQYLSLARSDHQPPLVLPLTSEMIDEEEHESTSSKIGELKSLVTLEHE
GFSEAEAQLYHMLLEERMKLARFSGTAPYAVCGDQTIKKIALIRPSTKARLANIDGVNQH
LVMTHGNHLLQTIRHLSQKLNLSLDGEVGLQTISIRKPLTPAKFEAWKMWHEEDLSIQKI
ANYPGRSAPIKEQTVVEYLLEAVQEGFEIDWTRLCVEIGLTNEILLAIQGAISKVGSTDK
LKPIKNELPEDISYAHIKLFLAMEKWGKLQEVMAPSHNKADGFLSEAPREHSTDACHIEG
PHVVEESPKNMVANCSSHNNEESASLTSTSVKGPKLAHDDDDERGSMKRQRVENEAGSSS
AFRATESSILNFIQEYDEGVSLSNILEYFDGSEAGAVIDLLTSLEENSSRQKRRCSKEHA
V
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggagtctactctcaaaaaattttttggttattccgagttccgtccttatcaaaaggag
gtcattcatcaaattatagacaaaagggactgcctagttgtcatggctactggtagtgga
aaatctttatgctatcagcttcctcctttgcttactggaaaaacggccgtagtcgttagc
cctcttatatctttgatgcaagatcaggtgatgagtttaaaacaaaggggcatcaaagct
gagtatcttggctctgctcagactgatcctactgtccagacaaaagctgagactggtcat
tttcatttattgtttatgactccagaaaaagcatgcttaattcccataagtttttggtca
aaattgctgaaagtgggcatttctctgttcgctgttgatgaagcacattgcatatcacaa
tggggccatgatttcagggtcgaatacaagcagttagacaagttacatgatactctcatg
gatgttccatttgttggcttaactgcaaccgctactgaaaaggtccgcaatgacattatg
aattccctaaaaatgaaggatccttatgttgccattggatcatttgatcgcaaaaatctc
ttctatggtgtgaaagttattaatcggggtcagtcatttgtggatgagcttgtgaaagaa
atttcagtgtttgtagctaatgctggttcaactattatttactgcacgacaatcaaagat
gttgagcagattttcaaggcacttttggaggtgggaattgaggctggaatgtatcatggt
caaatgggaagtaaagctcgtgagaagtctcacagattatttattacggatgaactccgt
gttatggttgccactgtagcttttggcatgggtattgataagcctgacataaggcatgtg
atacattatggttgtccaaagagtttggagtgctactatcaggaaagtgggcgatgtggt
agagatggtatagcttccgcttgttggctttattttgcaagaagtgactttgcaaaggct
gaattctactgtggagaaacccaaacagagaaccaaagaaaagctgtcatggagtcactg
ttggctgcacaacactattgcttattgacaacttgcagaagaaagttattgcttaatcac
tttggagaaatatattcagctgacaaatgtggaaattgtgataactgcacaatcttaaag
agggagcgggacatgtctaaggaatcatacatattaatggcttgcattcaagcatgtggg
ggtaattggggtctcaatatgcccatagacgttcttcgtgggtctcgatcaaaaaaggtt
cttgatgctctctttgacaagcttccacttcatggacttggtagggatcattcatcaaat
tggtggaaagcgctggcttaccaattaatctcttctggttatttaatggagactgtcaaa
gatatttacagaactgtaagtgtcagtcagaagggaaagcaatatcttagtttggcaaga
tctgatcatcaaccacctttagttttgccgctaaccagtgaaatgattgatgaagaggaa
catgaaagcacatcaagcaaaattggagaactgaagagtttagtgacattagaacatgag
ggattttcagaggctgaggcacaactctatcacatgctgttagaggagagaatgaagctt
gcaagattctctggaactgctccgtatgctgtatgtggtgatcaaactataaagaaaatt
gcattaataaggccatctactaaagcaagattggcaaacatcgatggtgtcaaccagcac
cttgtaatgacacacgggaatcatcttcttcaaactattaggcatctttctcaaaaacta
aacctttccctggatggcgaagtaggtttacagactatttctataagaaaaccgctgacg
cctgcaaagtttgaagcttggaaaatgtggcatgaagaggatctatcaattcagaaaatt
gctaactaccctggtaggtcagctcctataaaagaacaaactgttgtcgagtatctttta
gaggctgtgcaggagggatttgagattgattggaccagactgtgtgttgagattggactg
acaaacgagattttgttagccattcagggtgcaatctcaaaggttggctccacagacaag
ttgaagcccatcaagaatgaactaccagaggatataagttacgcacatatcaagcttttt
ctggcaatggaaaaatgggggaagttgcaagaagtgatggcacctagccacaacaaagct
gatggatttctgagcgaggcaccgcgagaacattctactgatgcatgccacattgaagga
cctcatgtagttgaagagtcgccgaagaatatggttgctaattgttcatctcacaataat
gaagaaagtgcctctcttacttccacaagtgtcaagggaccaaagctagcccatgatgat
gatgatgaacgcggttcaatgaaacgccaaagagttgaaaatgaagctggaagttccagt
gcattcagagcaacagagagttccatcttaaactttattcaggagtatgacgagggggtt
tcactgtctaatattttggaatactttgatggatcggaagcgggagctgtgattgatctg
cttacttccctggaagagaattccagcagacagaagagaagatgcagtaaagagcatgct
gtatga
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