Pistacia vera (pistachio): 116105947
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Entry
116105947 CDS
T07386
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116105947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116105947
03012 Translation factors [BR:
pvy03012
]
116105947
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116105947
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116105947
Translation factors [BR:
pvy03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116105947
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
nSTAND3
AAA_16
T2SSE
NACHT
ATPase
PhoH
AAA_30
AAA_11
Motif
Other DBs
NCBI-GeneID:
116105947
NCBI-ProteinID:
XP_031248165
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MPCSSFFMSLRPTSSPFYISPKTLLKPSLFSLLVSKNQCLSFRSIPPLRRHAVLSCSGAA
TRTRRLNWKNVSWPYLEQQTSNYGRFAYQDVSGDDSDREFGSNQQQMCGSTLDNIDDWRW
KLTMLLRNKDEQEVVSREKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKVPLPNYRSDL
DDKRPQREVILPFGLLREVDDHLKAYGQLKYRNGGFLSGNSLSKSGSSGSIATDEGLYEQ
RFPLAKNSVAMERILRRRSLQLREKQQDWQESPEGQKMLEFRRSLPAHKEREALLNAIAQ
NQVVVVSGETGCGKTTQLPQYILESEIEAARGAACSIICTQPRRISAIAVSERVAAERGE
KIGESVGYKVRLEGIKGRDTRLLFCTTGILLRRLLLDRNLEGVTHVIVDEIHERGMNEDF
LLIVLKDLLPRRPELRLILMSATLNAELFSSYFAGAPMLHIPGFTYPVRAYFLEQILEKT
GYRLTSYNQIDDYGQEKSWKMQKQAQALRKRKSQIVAAVEDALEAADFRDYSLRTQESLS
CWNPDSIGFNLIEHVLCHIAKNERPGAVLVFMTGWDDINSLKDQLQTHPLLGDPSRVLLL
ACHGSMASSEQRLIFDKPEGGVRKIVLATNMAETSITINDAVFVVDCGKAKEASYDALNN
TPCLLTSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQ
IKSLQLGSISEFLSRALQPPEPLSVKNAVDYLKIIGALDENENLTVLGRNLSMLPVEPKL
GKMLILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSSHDYSDHLALVRA
YDGWKDAERQQSGYEYCWKNFLSAQTLKAIDSLRKQFFYLIKDTGLVGCNTENCNKWSHD
EHLVRAVICAGLFPGICSVMNKEKSITLKTMEDGQVLLYSNSVNAGVPKIPYPWLVFNEK
VKVNSVFLRDSTGISDSVLLMFGGSISSGGLDGHLKMFGGYLDFFMKPALAYMYLSLKRE
IDELVQKKLLNPEMDMQVYNELLMAVRLLVSEDKCEGRFIFGRQVPAPSKEAAKVMLPGM
VSKGGDDNSKGELQTLLARAGHGAPTYKTNRLKNNQFRSTVMFNGLDFVGKPSSSKRHAE
KDAAAEALLWLKGESHSSARDLDHVSVLLNNSKSKSKKRT
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgccctgctcatcctttttcatgtctctaagacccacttcttcccccttctatatatcc
ccaaaaaccctattaaaaccctctctcttttcccttcttgtttccaaaaaccaatgcctc
tccttcaggtctatacctcccttgaggaggcatgcggtcctcagctgctcgggggctgcc
actagaacccgtaggttgaattggaagaacgtttcgtggccgtatttggagcagcagacc
tctaattatggccggtttgcctaccaggacgtttccggcgatgattccgatcgtgaattc
ggctcaaaccagcaacaaatgtgtggttcaacccttgataatattgatgattggagatgg
aagctaaccatgcttcttcgcaacaaagatgagcaagaggttgtgtcaagggaaaaaaag
gacagacgcgactttgagcaactttcagctctggctaccagaatgggtttgcatagtcgt
caatatgcaaaagtagtagtctttagtaaagtcccactgccgaattacagatccgatcta
gatgataagcgtccacagagagaggttatcttaccatttggactgttaagagaagtagat
gatcatctcaaagcttatggacaactcaaatatagaaatgggggatttttgtcaggtaac
tctttgtcaaaatcaggtagtagtggaagtattgctactgatgaaggactttacgagcag
cggttcccacttgcaaagaatagtgttgcaatggagagaattctccggcggcgaagtttg
cagctgcgtgaaaagcagcaagattggcaggaatctcctgaaggtcaaaagatgcttgaa
tttcgtagaagtcttcctgcacataaggagagggaagcattattaaatgccattgcacag
aatcaggtggttgttgtctcgggtgaaactggctgtggtaaaaccacccagcttcctcag
tacatattagaatcggaaattgaagctgctcgtggagcagcctgcagtatcatatgtact
cagcctagaagaatatctgccattgctgtttctgagagagttgctgcagaacgaggagag
aaaattggagaatctgttgggtataaagttcggctagagggaatcaaagggagggacaca
cgccttctgttttgcacaactggaatactattgaggagattacttcttgacagaaatttg
gaaggtgtaactcatgttattgttgatgagattcatgaacgtggaatgaatgaagatttt
ctccttattgtcttgaaagatctccttcctcgtcgaccagaattgaggttgattctgatg
agtgcaaccctaaatgctgagcttttttcttcctactttgctggtgctccaatgctacat
atcccgggttttacatatccagttcgagcatattttctggaacagattctggaaaagact
ggatatcggttgacctcttataatcaaattgatgattatggtcaagaaaagtcatggaaa
atgcaaaaacaagctcaagctctgagaaagaggaagagtcagattgttgcagctgttgag
gatgcacttgaagctgctgactttagagattatagcttacgcactcaagagtctttatcc
tgttggaatcctgactcaattggatttaacctcattgagcatgtactttgccacattgca
aagaacgagagacctggtgcagttttggtttttatgactggttgggatgacataaactca
ttgaaggatcagctccaaactcatcctcttttgggggatcctagcagggttttgttgctt
gcatgccatggttccatggccagctctgaacagaggttaatatttgataagcccgaaggt
ggagtaaggaaaatagttctagctactaacatggctgaaactagtatcactattaatgat
gcggtttttgtggttgattgtgggaaggcgaaagaggcatcttatgatgcactaaataac
actccttgtttgcttacatcttggatttcaaaggcttctgcccgacaaagaagaggaaga
gctggtcgtgttcagcctggtgagtgttatcatctttatcccagatgtgtgtatgatgct
tttgctgattatcagttgccagaacttttaaggactccgttgcagtccttgtgtttgcaa
atcaaaagtttacagcttggaagtatatctgaattcctctctagagccttgcagccacct
gaacctttatcggtaaaaaatgctgttgattatttaaagatcattggggctttagatgag
aatgaaaatctaacagtgctaggacgcaacttgtcaatgcttccagtagagccgaaactt
ggaaaaatgctgatattaggggctattttcaactgtctggatcccataatgactgttgtt
gctggtcttagtgttcgagatcctttcttgatgccgtttgacaagaaggatcttgcagag
tcagcaaaagctcagttttcttctcatgactatagtgaccatcttgcacttgtacgagcc
tatgatggttggaaagatgctgaaaggcagcaatctggttatgagtactgttggaaaaac
tttctttctgcacaaactctgaaagccattgactctctacgtaagcagttcttttatttg
atcaaggatactggtctggtaggatgcaatacagagaactgcaataaatggagtcatgat
gagcaccttgttcgggcagtcatctgtgcgggtttgttccctggaatatgctctgttatg
aacaaagaaaagtctataacactaaaaacaatggaggatggtcaggtgcttctgtactcg
aattctgtgaatgctggagtacccaaaattccctacccatggctagttttcaatgaaaag
gttaaagtgaattcagtttttctccgggattcaactggtatatctgattctgtgcttctc
atgtttggagggagcatttccagtggtggactggatggacacctgaaaatgtttggagga
tacttggattttttcatgaaaccagcattagcgtatatgtatttgagtttaaaacgagag
atcgatgaactagttcagaagaaacttctgaatcctgagatggacatgcaagtatacaat
gaacttttaatggcagtcagattgctggtgtcagaagacaaatgtgagggcagatttatt
tttggtcgtcaggtgccagcaccctcaaaggaggcagcaaaagtgatgcttccaggtatg
gtctcaaaaggaggagatgataattccaagggtgagctgcaaacgttgcttgccagggca
ggacatggagctccaacctacaagacaaatcggctgaaaaacaaccagttccgttctact
gtgatgtttaatgggttggattttgtggggaaaccttccagcagtaagagacatgctgaa
aaggatgcagctgctgaggctctgctatggttgaaaggcgagagtcattcttctgcaaga
gatctggaccatgtctcagtgcttctgaataatagcaaaagcaaaagtaaaaagagaact
taa
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