Pistacia vera (pistachio): 116105988
Help
Entry
116105988 CDS
T07386
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03030
DNA replication
pvy03420
Nucleotide excision repair
pvy03430
Mismatch repair
pvy03440
Homologous recombination
pvy03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116105988
03420 Nucleotide excision repair
116105988
03430 Mismatch repair
116105988
03440 Homologous recombination
116105988
03460 Fanconi anemia pathway
116105988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pvy03000
]
116105988
03032 DNA replication proteins [BR:
pvy03032
]
116105988
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116105988
Transcription factors [BR:
pvy03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116105988
DNA replication proteins [BR:
pvy03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116105988
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116105988
MMR (mismatch excision repair)
116105988
DSBR (double strand breaks repair)
HR (homologous recombination)
116105988
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RMI1_C
UDG-inhib_P56
Motif
Other DBs
NCBI-GeneID:
116105988
NCBI-ProteinID:
XP_031248217
LinkDB
All DBs
Position
Unknown
AA seq
624 aa
AA seq
DB search
MAKTVTPDAISILLSNPSPDSSSDLPEIVVQVLDLKLTGNRYMFNANDGKLXLKGHFAIK
LSSEVISGNIQNKGLIRILDYALNDSDSKSEKYLIVTKCKVVAPALEMEIKSEVKSQEVG
GIILKPKQENEMKSEVKREGACILVRPKQEIISKSAAQIVHEQHGNMAPAARMAMTRRVH
PLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDQDSTQIQATMFNDAARK
FYDRFQLGKVYYISRGTLKLANKQFKTVQNDYEMTLNENSEVEEASNEETFIPETKFKFV
QIDELGPYVNGTELVDIIGVVQSVSPTMSIRRKSNNEMVPKRDMTVADETKRTVVVSLWN
DLATNVGQELLDMVDQSPVVAIKSLKVGDFQGISLSALGKSTVLINPDIPEAKKLRAWFD
SEGKETSMASIGSGLSPPTKIGAWSMYSDRVTLSHITSDPLMGEEKPVYFSIRGFISLIK
PDQTMWYRACKTCNKKVTDGMGSGYWCEGCQKNDEECCLRYILVVRVSDESGEAWISVFN
NEAESIIGCSADELDKLKSQVEDNSYQMKLKEVTWVPYLFRVSVIQREYNNEKRQRITAK
AVAPVDFAAESKFLLEELTKKASQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacagtaaccccagatgcaatatcaatcttattatcaaacccctctccagat
tcgtcctctgatctccctgagatcgtcgtccaagttttagatctcaagcttactggcaac
cgatacatgtttaatgctaatgatgggaagttgnnacttaaggggcattttgccatcaaa
ttatcgtcagaagtcatctcaggaaacattcagaacaagggtctcattcgtattctcgac
tatgctctcaacgactccgactctaaatctgaaaaatacttgattgtgacaaaatgtaaa
gtggtggcacctgcacttgaaatggagattaaaagtgaggtgaaaagtcaggaagttggt
ggtataattttgaagccaaaacaagaaaatgagatgaagagtgaggtgaaaagagaaggg
gcttgcattcttgtcagacctaaacaagaaataatttctaaatctgctgctcaaatagtt
catgaacagcatggaaatatggctcctgccgcccgaatggctatgactagaagagttcat
cctcttgtttccttgaatccctaccaaggcaattggacaataaaagttcgtgttacaagc
aaaggtaacatgcgtacttacaagaatgcaagaggagaagggtgtgtcttcaatgtggag
ttaacagatcaagatagtacacaaatacaagcaacaatgttcaatgatgctgcaaggaaa
ttctatgacaggttccaattgggaaaggtgtattacatatctcggggaacacttaagctt
gctaacaagcaattcaaaactgtgcaaaatgattatgaaatgaccttgaatgagaattct
gaggtggaagaagccagtaatgaagaaaccttcatccctgaaacaaaatttaaatttgtt
caaattgatgagttgggcccttatgttaacggaactgaacttgttgatattattggagtt
gttcaaagtgtttctccaacaatgagcattcgaaggaagagtaacaatgaaatggttcca
aagcgtgatatgactgttgcagatgagacgaagaggacagttgttgtctctttgtggaat
gacctggcaactaatgtaggccaggaattgcttgatatggtcgatcaatctccagtagtt
gctattaaatccctcaaagtaggagactttcaaggtatatctttgtcagcacttggaaaa
agcacagtactgatcaatcctgatattccagaagcaaagaagttgagggcctggtttgat
tcagaaggtaaagagacttcaatggcctctattggctctggtttgagtcctccaaccaaa
attggggcctggtccatgtactctgatagagtaaccctttctcacataacaagtgaccca
ttaatgggagaagaaaagccagtgtattttagcattagaggatttattagcctcatcaag
cctgatcagactatgtggtaccgtgcttgcaaaacttgcaacaaaaaagtgacagatgga
atgggatctgggtattggtgtgaaggatgccagaaaaatgatgaagagtgttgtttaaga
tacattctggttgtgagggtttctgatgaaagtggtgaagcttggatttctgtatttaat
aatgaggcagaaagtataattgggtgctctgctgatgagcttgataaattgaagtcacag
gtggaagataattcataccaaatgaaattgaaggaagttacttgggttccttatcttttc
cgggttagtgtcattcaacgtgagtacaacaatgagaaaagacaaaggataactgcaaag
gctgttgctccagttgattttgctgcagaatccaagtttttgcttgaagagttaacaaag
aaagcttctcaatag
DBGET
integrated database retrieval system
