Pistacia vera (pistachio): 116106117
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Entry
116106117 CDS
T07386
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116106117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pvy03400
]
116106117
DNA repair and recombination proteins [BR:
pvy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
116106117
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
DEAD
Astrovir_pp_1
Motif
Other DBs
NCBI-GeneID:
116106117
NCBI-ProteinID:
XP_031248329
LinkDB
All DBs
Position
Unknown
AA seq
1305 aa
AA seq
DB search
MGQTGSFLKTIARDLILPLGSGTYMLMLTTSIVILVIWGDLSKTFEAFFHDSWQPVEFIR
IEDGIVTMHLTDNQTLVEEKRPFSNLRLKSRRATLSDCTCFLRPGVDVCLLSATENAENS
EEENKDPVWLDAKISSIERKPHGDQCLCQFYVKLYVNQGPLGSERGTLSKESKLVGIDQI
TILQKLGKDACEDQHYRWDFSEDCSLLQRSKLLLGKFSSDLSWLLVASVLKQTPFDIGSV
QNKIVYQVLDGDEENSAPNSDKHLYAINFNVDGGISTSHVVQFIQTDTKPVSPDCSVQEA
GPVPLCDVMNLRRSKRRNVQPERFFGCDIPPDSDIGWVRQLPYKPDKWKEEDLYLPLPCL
VWGHSNCSEENVESDTRNLPKKKSRNKHKEVKTSMASQKEHNTELAIVPVPTESDPLAFY
QDDLPAKNPENHSGEIDETPLKYYLKGPRSVQRRDTSELEDTEFERWWGEINPNKKVLSK
NISKVEDMGFESRTWGKLSNKKVQTNRFRPRSSKNDACCERKVYKKTTLSAGAYSRVINS
YMKNIESTMTNEEPDIIDQWNGFKANSLEQMMEMEQSEMEQTSSEDDGEISENEILWKEM
ELSMASTYILEDNEGSKSGEPTETLEKSSEGCQHKYRLDEEVGICCIKCGFVRTEIKYVA
PPFMQHRIWETDNKVEDQEYSKHKPVEDEGLNIFCNQASSDFSLSEENDNVWALIPELKK
KLHFHQKKAFEFLWRNIAGSVEPALMQPASKKTGGCVISHSPGAGKTLLIIAFLVSYLKL
FPGKRPLVLAPKTTLYTWYKEFNKWKIPIPVHLIHGRRTYRVFKPKRVKSFRGVPAPTLD
VMHVLDCLEKIQKWHAQPSVLVMGYTSFLTLMREDANFAHRKYMAKVLRESPGILILDEG
HNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFINEVLRELDPKF
KRRKNKKKALHLLESRARKFFIDTIARKIDSDNGEERMQGLNMLKNITSGFIDVYEGVGS
EELPGLQIYTLMMNPTDVQRNILEQLQDIMKDYNGYPLELELLITLASIHPWLVKTSNCV
NKFFTPEALMDLEKYKHDFRKGSKVMFVLNLVYRIVKQEKVLIFCHNIAPINLFSELFQK
VFRWQKGKEILVLTGDLELFERGRIMDKFEEPGGPSRVLIASITACAEGISLTAASRVIM
LDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLASETLEEDKYRRTTWKEWVSCMIFSEEF
VEDPSLWQIEKIEDDILREIVAEDKLKSFRMIMKNEKASKGLIRT
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgggccagaccgggtcatttctcaagacaatagctagagacttgatactaccacttgga
tctggaacctacatgctgatgctcacaacttcgatagtcatactagtgatttggggagat
ctctcgaaaacttttgaggcattttttcatgactcatggcaacctgtggagttcataaga
atcgaggatgggattgtcaccatgcatctcacagataaccaaactctggttgaggagaaa
cgtccattctcaaatcttcgactaaaatcaaggagagcaactttatctgactgcacctgc
tttttgaggcctggagttgatgtatgtctgctttcagccactgaaaatgcagagaattca
gaggaagaaaataaagatcccgtgtggcttgatgctaaaataagttccatcgagagaaag
cctcacggagatcaatgcttatgccagttttatgttaaattatatgtcaaccaaggtcct
cttggttcagagaggggaactctcagtaaagagagtaaactagtaggaattgatcaaata
accatcctccaaaagcttggaaaagatgcttgtgaagatcaacactaccggtgggatttc
tctgaggactgctctttgttgcaaagatctaagctgctgctggggaaattttcatctgat
ctttcatggttacttgttgcatcagttttgaagcagactccgtttgatattggatctgtg
caaaacaaaatcgtctatcaagttttggatggtgatgaagaaaactctgcaccaaactca
gataaacatctatatgctataaatttcaatgttgacggtggcatttcaacatctcatgtg
gttcagtttattcaaactgatactaaaccggtcagtcctgattgtagtgtgcaagaagct
ggaccagtgccactttgtgatgttatgaacctgcggcgatccaagcgtcgaaatgtacaa
cctgagcgattttttggctgtgatattcctccagactcagacattggctgggttcgccaa
ttgccatataagcctgacaaatggaaagaagaagatttgtacttaccattaccatgcctg
gtatgggggcattcaaattgctcagaagagaatgtggagagtgacacaagaaatcttcct
aaaaagaagagcaggaataaacataaggaggtgaaaaccagtatggccagtcaaaaagaa
cataacactgaacttgccattgttcctgtgcctactgaaagtgatccattagccttttat
caggatgatctccctgccaaaaatcctgaaaatcattcaggagagattgatgaaactcct
ctcaagtattatttgaaaggtcctcgttcagtgcagaggagggatacatctgagttagaa
gatactgagtttgaaagatggtggggagaaataaaccccaacaaaaaagtgctaagtaaa
aatatctccaaggtagaagatatgggatttgaaagtaggacatggggaaaactgtccaac
aagaaagtccaaactaacagatttcgtccaagaagttcaaaaaatgatgcatgttgtgaa
agaaaggtgtataagaaaacaaccttaagtgcaggagcatacagtagagtaataaattca
tatatgaagaatattgagtccacaatgacaaatgaagaaccggatattattgaccagtgg
aatggatttaaggcaaactccctagagcaaatgatggaaatggaacaatcggaaatggag
caaacctcaagcgaagatgatggagaaatttcagaaaatgaaattttatggaaagaaatg
gaattatctatggcatcaacttatatccttgaggacaatgagggttcaaaatctggagag
ccaactgagactctggaaaaatcaagtgaaggttgccaacacaaatacagattagatgaa
gaagttggaatttgttgtattaaatgtggtttcgtgcgcacggaaataaaatatgttgca
ccaccctttatgcaacacagaatctgggaaactgacaataaggtggaggatcaagaatat
tcaaagcataagcctgttgaagatgagggcctgaatattttctgcaaccaagcttcctct
gacttctccttatcagaagagaatgacaatgtgtgggccttaattcccgaacttaagaag
aaattgcattttcatcagaaaaaggcttttgaatttctatggagaaatattgctgggtct
gtggagccggcacttatgcaaccagcatctaagaaaactggcggttgtgttatttctcat
tctcctggcgctggaaaaactttgctcattattgcattccttgttagctacttgaagtta
ttcccaggaaaacgacctttggtccttgccccaaagacaactctttatacctggtacaaa
gaatttaataagtggaaaattcccataccagttcatctaatccatggccgtaggacctat
agagtcttcaagccaaaaagggtaaagtcattccgaggagttccagcccctactttagat
gttatgcatgttctggattgcttggagaagatacagaagtggcatgcacagcccagcgtt
cttgtcatgggttacacttcgtttctaacactaatgcgggaagatgcaaactttgcacac
agaaaatatatggctaaagtgctgcgggagagtccagggatcctgatactagacgaaggg
cacaaccctagaagcactaagtcaagattgaggaaggttctgatgaaagttgaaacagac
ctgagaatattgctttcaggtacattatttcagaacaacttctgtgagtatttcaataca
ctctgcttggcccgaccaaagtttatcaatgaagtgctgagggaactagacccaaaattc
aaaaggagaaaaaataagaagaaggccctccatttattagaatctcgcgcaagaaaattc
ttcatagataccattgcaagaaagattgattcagacaacggtgaagaaaggatgcaaggt
ttaaatatgttgaaaaatatcacaagtggatttatcgatgtgtatgaaggtgtaggttct
gaggagctccctggtttacaaatttacaccttaatgatgaatccaacggatgtacaacgt
aacattttagagcaacttcaggatattatgaaggattacaatgggtatcctcttgagttg
gagcttttgataacccttgcatcaatacatccttggttggtaaaaacttcaaattgtgtt
aacaaattttttactcccgaagcactaatggatcttgaaaagtacaaacatgattttaga
aaagggtccaaagtgatgtttgttctaaatcttgtgtatcgaattgtcaagcaagagaag
gttctgattttttgccacaatattgcacctatcaatttgttttcagaactgttccagaaa
gtctttcgatggcagaagggtaaagaaattttggttctcacaggggacctagagctgttt
gaacggggaagaataatggataagtttgaggaacccggtgggccttcaagggtattgatt
gcttcaattacagcgtgtgctgagggtattagtttgacagcagcttcgcgggtgattatg
ttagattcagagtggaatccttccaagacaaagcaggccattgcacgtgcttttcgacct
ggtcaacagaaggttgtttatgtgtatcagctcttggcatctgaaacactcgaagaagac
aagtatcgcaggacaacatggaaggaatgggtatcctgtatgattttcagtgaggaattt
gtagaggacccttctctctggcaaatagaaaaaattgaagatgatatattgagagagatt
gtggcagaagacaagttgaagtctttccgtatgataatgaaaaatgagaaggcttcaaaa
ggattgatcagaacctag
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