Pistacia vera (pistachio): 116106369
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Entry
116106369 CDS
T07386
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy04120
Ubiquitin mediated proteolysis
pvy04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116106369
04120 Ubiquitin mediated proteolysis
116106369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pvy04121
]
116106369
Enzymes [BR:
pvy01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116106369
Ubiquitin system [BR:
pvy04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116106369
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
FlxA
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
116106369
NCBI-ProteinID:
XP_031248585
LinkDB
All DBs
Position
Unknown
AA seq
541 aa
AA seq
DB search
MVRLPTYAGCSLTLTIAVIYHAFSSRKQFYPAMVYLSTSKISLVLLLNMGLVVMCVLWQM
IKRLFLGTLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLA
QKRVEYIETTPTVPMLSHVRIVSFMGFLLLLDSLFLYSSVKFLIQTRQASVSLFFSFEYM
ILATTTVSIFVKYIFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYG
VPLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDATPEELNASDSTCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEGGASTAGGQHGPRPDAHHAGTGN
STATQSSADGLADNNLSQHQARLQAAAAAASIYGKSFVYPSPNSPVWSPGYVVLPQSYRP
LGDSTNVESRGEQASSGQEQFQNPGASTSFPFAQFPHGFVPFQAPGANVTYGERLEAQKK
FIKHQIEVLQDQLQQLQKLKPEASSEKDSSELSDGKGKTVASSSLPVSDCGRHSDNEETA
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggctgccaacgtacgcggggtgtagtttaacgcttactatagctgttatttac
catgcttttagtagtagaaaacaattctatcctgctatggtttatctatcaacttctaag
atcagtttggtgctgcttctgaatatgggtttggtggtaatgtgtgtcttgtggcaaatg
atcaaacggttattccttggcactctccgggaagcggaggttgaaaggttgaatgagcag
tctaggagggagatcatggagattctgtttgcaattactatatttcggcaggacttttcg
gtttcgttccttgctatggttactacactgttgttgatcaaagctttgcattggttggct
cagaagagggtggagtacattgagacgaccccaactgtccccatgttgtctcatgttcgg
attgtttcttttatgggtttccttcttcttctggattctctctttttgtatagttccgtt
aagttcttgatacaaacacggcaggcttctgtttctctcttcttttcgtttgagtacatg
atactggcaacaacaacggtgtcgatatttgtaaagtatattttctatgtgagtgacatg
cttatggaagggcaatgggaaagaaaggctgtttacaccttctacttggaacttatccgt
gacttgcttcatttatccatgtacctttgcttctttcttgtgatatttatgaactatggt
gttcctttgcacttaattcgagagctttatgagacatttaggaatttcaggattcgtgtt
gctgattatgttcgttatcggaagatcacttcaaatatgaatgatcgatttccagatgcg
accccggaagagctgaatgcaagtgattcaacatgcattatatgtcgtgaggagatgacc
acagccaagaaattaatttgtggacatctttttcatgttcattgcctccgctcctggtta
gagcggcagcatacctgtccaacttgcagagctctagttgtaccacctgaagggggggca
agtacagctggaggacaacatggaccaagaccagatgctcatcatgcaggtacaggcaat
tcaacagcaacccagagttcagctgatggtttggctgacaataacttgagccagcaccag
gccaggctccaggctgctgctgccgctgcctcaatatatgggaaatcctttgtttatcct
tctcctaactcaccagtgtggtctcctggatatgttgtacttcctcagtcctataggcca
ctgggtgattccaccaatgtggaatctcgtggagaacaagcttccagtggacaagaacag
tttcagaatcctggtgcatctacgtcctttccctttgctcaatttccacatggttttgtc
ccttttcaggcacctggtgctaatgtgacatatggagaaagattggaagctcagaagaag
ttcatcaagcaccagattgaggtcttgcaagaccagctccaacaattgcaaaagttgaaa
ccggaggcaagttctgagaaggattcttctgaattatcagatggcaaaggaaagactgtc
gcatcttcttcattgccggtttcggactgcggtcgtcacagtgacaatgaagagacagct
tcatag
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