Pistacia vera (pistachio): 116107123
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Entry
116107123 CDS
T07386
Name
(RefSeq) vacuolar sorting protein 18 isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116107123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pvy04131
]
116107123
Membrane trafficking [BR:
pvy04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116107123
Hops complex
116107123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_11
zf-rbx1
zf_RING_Vps8
zf-RING_Vps41
Nup54_57_C
RPN1_RPN2_N
zf-RING_UBOX
zf-ANAPC11
zf-RING_2
zf-C3HC4
RING_XB3-XBAT31
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
116107123
NCBI-ProteinID:
XP_031249286
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MDQMRQVFSVDVLERYAAKGRGVITCMSAGNDVIVLGTSKGWLIRHDFGAGESYDIDLSV
GRPGEQSIHRVFVDPGGSHCIATILGSGGAETFYTHAKWSKPRILSKLKGLTLNAVAWNR
QQITEASTKETILGTDNGQFHELAVDEKDKREKYIKFLFELTELPEAIMGLQMETASLSN
GTRYYVMAVTPTRLYSFTGFGSLDTVFASYLERAVHFMELPGEIPNSELHFFIKQRRAVH
FAWLSGAGIYHGGLNFGAQHSSPNGDENFVENKALLNYSKLSEGTEAVKPSSMAVSEFHF
LLLLGNKVKVVNRISEQIIEELQFDQTSESMPKGIIGLCSDATAGIFYAYDQNSIFQVSV
NDEGRDMWKVYLDMKEYAAALANCRDPLQRDQVYLVQAEAAFAAKDFLRAASFYAKINYI
LSFEEITLKFISVSEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLED
DTALDNRSSEYQSIIKEFRAFLSDCKDVLDEATTMKLLESYGRVEELVYFASLKEQYEIV
VHHYIQQGEAKNALEVLRKPAVPIDLQYKFAPDLIMLDAYETVESWMTTNNLNPRKLIPA
MMRYSSEPHAKNETNEVIKYLEFCVHRLHNEDPGVHNLLLSLYAKQEDDSTLLRFLQCKF
GKGRENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEELRKKLWLMVAKHVVEQEKGAKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNKQIEQLKQEMNDATHGADNIRNDISALAQRYAVIDRDEDCGICR
RKILTVGGDYRMARGYTSVGPMAPFYVFPCGHAFHAHCLIAHVTHSTNETQAEYILDLQK
QLTLLGCESRKDSNGVLTDDSITSMPPTDKLRSQLDDAVASECPFCGDLMIREISLPFIA
PEEAHQVSSWEIKPLNLANQRSFSLPA
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatcagatgaggcaagttttctcggtagatgttcttgaaagatacgcggccaagggg
cgaggtgtcattacatgtatgtcagctggtaatgatgtgatcgtattaggaaccagtaaa
ggatggcttattagacacgatttcggcgccggtgaatcttatgatattgatctttctgtg
ggccgacctggggagcaatctatccacagagtttttgttgatcctggaggtagtcactgt
attgccaccatccttggtagtggtggcgctgaaactttctacactcatgcaaagtggagc
aagcctcgtattttaagcaaattgaaaggtcttactctaaatgctgttgcctggaacaga
caacagataactgaagcttctacgaaggaaaccattcttggtacagacaatggccaattt
catgagctggctgtggatgagaaggacaagagggaaaagtatataaaatttttatttgag
ttaactgagcttccagaagctattatgggcttgcagatggaaacagctagcttaagcaat
ggtactagatattatgtgatggctgttactccaacacgactttattctttcactggattt
ggatcacttgatactgtatttgctagctacttagaacgtgctgtgcatttcatggaactt
cctggtgaaataccaaacagtgagttgcatttttttatcaagcaaagaagagctgtgcac
tttgcatggctttctggagcaggtatctatcatggtggcttaaactttggagcacagcat
agttctccaaatggtgatgaaaattttgtggagaacaaggctcttttgaactactcaaaa
ttgtctgaaggtactgaagcagttaaacccagttctatggcagtgtctgaatttcatttc
ctgctgcttcttgggaataaggttaaggttgtaaatagaatcagtgaacaaatcatagag
gaacttcagtttgaccaaacatcggagtcaatgccaaagggtatcattggattatgtagt
gatgcaactgcgggaattttttatgcatatgaccaaaactctatctttcaggtttctgtc
aatgatgaaggccgagatatgtggaaggtttatttggatatgaaagagtatgctgcagct
ttagcaaattgtcgtgacccactccaaagagaccaagtatacttggttcaggctgaagct
gcattcgctgccaaggattttcttagagcggcatctttctatgcaaaaatcaactatatc
ctatcctttgaggagatcactctgaagtttattagcgtaagcgaacaggatgctttgaga
actttcttattacggaagcttgataatcttgcaaaggatgacaaatgccaaataacaatg
atttccacatgggcaactgaattgtacttggacaagataaatcggctactcttagaagat
gacactgctttggacaatcgtagttcagaataccaatcaattattaaagagtttcgtgcc
ttccttagtgactgcaaggatgtattggatgaggcaactacaatgaaacttctagaaagc
tatggtagagttgaagaactggtatactttgctagtttgaaagagcaatatgaaattgta
gttcatcattatatccagcaaggagaagcaaagaatgctttggaagtgcttagaaaacct
gctgttcctatagaccttcagtacaagtttgctccagatcttatcatgcttgatgcatat
gaaactgtggagtcatggatgaccactaacaacctaaacccaaggaaactgattcctgct
atgatgcgctattcaagtgaacctcatgcaaagaatgaaaccaatgaagtcatcaaatat
ctagagttctgcgtccatcgcttgcataatgaggatcctggggttcacaacttgctgctt
tctttgtacgccaagcaggaagatgacagtacccttttgcgtttcctacaatgcaaattt
ggaaaaggacgagaaaatggacctgagttcttctatgatcccaaatatgccctgcgcctt
tgcctgaaggaaaagcgaatgcgtgcctgtgttcatatatacagcatgatgtctatgcat
gaagaagcagttgcacttgctctacaggttgaccctgagctcgctatggctgaagctgac
aaggttgaagatgatgaagaattaaggaagaagctttggcttatggttgcaaagcatgtg
gttgaacaggaaaagggagctaaaagggagaatatacggaaggcaatagcatttctcaag
gaaactgatggtctattaaagattgaggatatattaccattctttccagactttgccttg
attgatgacttcaaagaagcaatttgctcatcactagaggactacaacaagcaaattgaa
cagctcaaacaggagatgaatgatgcaacacatggagctgacaacatcagaaatgatatc
agtgctcttgctcaaagatatgctgtcattgatcgtgacgaggattgtgggatttgtagg
cgtaaaatcttgaccgtgggtggagattaccgaatggctcgaggttacacatcggtagga
ccaatggcccctttctatgtctttccatgtggacatgccttccatgcacactgcctgatt
gcgcatgtaactcattccaccaatgaaactcaagcggagtatatactggatttgcagaag
cagttaactctactgggttgcgaatccaggaaggattcgaatggtgtcttgactgacgat
tccattactagcatgcccccaacagacaagctccgatcacagttagatgatgcagtagcc
agtgaatgccccttttgtggtgacttgatgatccgtgaaatatctttgccttttattgct
cctgaggaagcacatcaggtttcttcatgggagattaaaccactgaaccttgcaaaccag
aggagcttttctttacctgcatga
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