Pistacia vera (pistachio): 116107259
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Entry
116107259 CDS
T07386
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
pvy
Pistacia vera (pistachio)
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pvy03019
]
116107259
03036 Chromosome and associated proteins [BR:
pvy03036
]
116107259
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
116107259
Messenger RNA biogenesis [BR:
pvy03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
116107259
Chromosome and associated proteins [BR:
pvy03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
116107259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
UvrD-helicase
ResIII
AAA_16
AAA_22
ATPase_2
SLFN-g3_helicase
NAT10_TcmA_helicase
AAA
DAP3
DEAD
AAA_24
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
116107259
NCBI-ProteinID:
XP_031249415
LinkDB
All DBs
Position
Unknown
AA seq
880 aa
AA seq
DB search
MSKEIRDSWDDECSVIGDKGEIGFIDFEDDQSVLSYDPNGEGPVIISIPFPFLQGKPQSV
FVGETSKCSITIKNSTSDPMDIWGIKIFCSNPADSFTLSLMEPNSKSENIQGFLEGFSIE
DRVLQPLQTLTIWLSCKPKDMGLHTTVVHFDIGDDRIERVVFLLAEDKVSQSLASNKPYR
RQPRKKNFAVDEYVVSSRPARTTNQGFKSRLREYPIPKDVRELLMNKQLPEVVAQGLARN
NYAAFFSTLLIMEELRLEEDMRSYNLECVRMRRKGAQSLALEVPGLAEKRPSLVHGDHVF
VKLSAGSSGDNNVYKGHIYHVEADEVLLNFAKEFHASHKNENLYDVRFSYNRVGMRRLYQ
AVEAAENLESVLLFPSQSTKRRLVKTNPFMPFTILNEEQMCSVEIILGCKGAPPYVIYGP
PGTGKTMTLVEAILQVYATRKNGRILICAASNSAADHILERLVGNQVVKVKETEIFRLNA
TSRAYGDVSPDYIRFCYFQDSIFKCPPLQALSRYRIIISTYMSSALLNAEGIKRGHFSHI
FLDEAGQASEPESMIPIANLCRRETVVVLAGDPKQLGPVIFSKDAEVFGLGKSYLQRLFE
CEFYHNEDEGYVTKLVRNYRCHPAILDLPSKLFYKGDLLACKEDTSSSISAEVDFLPNKE
FPILFFGIQGCDEREGNNPSWFNRFEASKVVDIINKLRESTDLNEADIGVITPYRQQVLK
IRKVLEAWDMPDVKVGSVEQFQGQEKEVIIVSTVRSTVKHNQFDRTYCLGFLSNPKRFNV
AITRAKSLLIIVGNPHIVCQDRYWDKLLWYCCDNNSYQGCPLPERPDHADEMLNPEMNSS
NEFESPHSKVGAWGQPFQGEDIPEIPQPVTDEAEWSDGWK
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagaaattagagatagttgggatgatgaatgctctgttataggagataaagga
gagattgggtttattgattttgaggatgatcagtctgtcttaagttatgacccaaacgga
gagggtccagttattatatccattccatttccatttcttcaagggaaacctcaatctgtt
tttgtaggagaaacttcaaagtgttcaataactataaagaactctactagtgacccaatg
gacatttggggaattaaaatattctgctcaaatcctgcggactcttttacattatctctt
atggaacccaactcaaaatcagaaaatattcaaggcttcttggaaggattttctatcgag
gacagagtgcttcaacctctccagactttaacgatttggttatcttgcaaacctaaggac
atgggtttgcacacaactgtggtgcactttgatataggagatgatagaattgaacgtgtg
gtatttctattggcagaagacaaagtctctcagtctctagcttctaacaagccatataga
agacagcctagaaaaaagaattttgctgttgatgaatatgttgtctcctcacgtccagct
aggacaacaaatcaaggtttcaagtctaggctccgagaatatccaatcccaaaggatgtt
cgagagttgctgatgaataagcaactccctgaagttgtagctcaaggtttagcgaggaat
aactatgctgctttcttcagtacattgcttatcatggaagagctacgtttggaggaagat
atgcggtcctataatttggaatgtgtcagaatgaggagaaaaggggctcaatccctggct
cttgaagtccctgggttggctgagaagaggccttcacttgtacatggagatcatgttttt
gtgaagctttctgctggcagctcaggtgataataatgtgtataagggtcacatctaccat
gttgaggccgatgaagtgcttctgaattttgcgaaagaattccatgctagtcacaaaaat
gagaatttatatgatgtcagattctcatataatagggtaggcatgaggaggttgtatcaa
gctgttgaagctgcagaaaatttagaatctgttcttctatttccatcacaatcaaccaaa
aggagattggttaaaacaaatccttttatgccatttacaattctaaatgaggagcagatg
tgttccgttgaaataatccttggttgcaaaggtgctcctccgtatgtgatttatgggcct
cctggtacgggtaaaactatgactttagtggaagcaatcttgcaagtttatgccacaaga
aagaatggtcggattcttatttgtgctgcttcaaacagtgctgcagatcacatattagag
agactcgttggtaatcaggtggttaaagtgaaagagactgagatatttcggcttaatgct
actagccgtgcttatggggatgtttcccccgactatattcgcttttgctattttcaggat
tccattttcaaatgtcctccacttcaggccttgagccgttataggatcatcatatctacc
tatatgagttcagctctacttaatgcagaaggtattaagcgtggccatttttctcatatc
ttcttagatgaggctggccaagcttcagagccagaaagcatgattcccatagccaacctt
tgtcgtagagaaactgtagttgttcttgcaggagatccaaagcaactgggtcctgttata
ttttcaaaagatgccgaggtttttggattaggaaaatcttatcttcaaaggctatttgag
tgtgaattttaccataatgaagatgaaggttatgtaacaaagttggtgagaaattatcgg
tgtcatccggcaattctagacctcccttcaaagcttttctacaaaggagacttacttgca
tgtaaagaagatacctcttcctccattagtgctgaggtggatttccttcctaacaaagaa
tttcctattctgttctttggcattcaaggctgtgatgaaagagaaggcaataatccgtca
tggtttaacagatttgaggcaagcaaggttgttgatatcatcaataagctgagagaaagt
actgatctcaatgaggcagatattggggttataacaccttatcgccagcaggtcctcaag
atcagaaaagtacttgaagcttgggacatgcctgatgttaaggttgggagtgttgagcaa
tttcagggacaagagaaagaggttattattgtatcgactgtcaggtcaacagtcaaacac
aaccagtttgacagaacttactgcctaggatttcttagcaatccaaagagattcaatgtt
gcaattacccgtgccaaatcattgcttattattgttgggaacccacacatagtctgtcag
gatcgttactgggacaagcttttatggtattgttgtgacaataactcataccaaggctgt
cctctccccgaaagaccagaccatgcagatgaaatgctgaatccagaaatgaactcaagt
aatgaatttgagagtccacactcaaaagtaggggcatggggccaaccatttcaaggagaa
gacattccagaaattccacaacctgttactgatgaagctgagtggtcggacggctggaag
taa
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