Pistacia vera (pistachio): 116107713
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Entry
116107713 CDS
T07386
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pvy
Pistacia vera (pistachio)
Pathway
pvy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pvy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116107713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pvy03041
]
116107713
03009 Ribosome biogenesis [BR:
pvy03009
]
116107713
Enzymes [BR:
pvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116107713
Spliceosome [BR:
pvy03041
]
Complex A
U1 snRNP components
U1 related factors
116107713
Complex B
116107713
Ribosome biogenesis [BR:
pvy03009
]
Eukaryotic type
Pre-60S particles
Helicases
116107713
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116107713
NCBI-ProteinID:
XP_031249862
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MAATATASSVRYAPEDPSLPKPWKGLVDGRTGYLYFWNPETNVTQYERPTNLAPPPTSSS
VPISSSVQVQQSSEGQRRGCSPEKEDDRYGRGTNGVSKLDVGSRGNQNSRGAPVQSHNVP
NGTASVGHGGSSMRGCGSSTAAVSLSPDAYRRRHEITVSGDDVPPPFMSFEATGFPSEIL
REVHNAGFSAPTPIQAQSWPIALQNRDIVAIAKTGSGKTLGYLVPGFIHLKRRHNNPLLG
PTVLVLSPTRELATQIQDEAGKFGKSSRIACTCLYGGAPKGPQLKDIDRGVDIVVATPGR
LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVRRQTLMYTATWPKEVR
KIAADLLVNPVQVNIGNVDELAANKAITQYIEVLAPMEKHRRLEHILRSQEPGSKIIIFC
STKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRTGRSPVLVATDVAARGLDIKD
IRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKLLEGANQRVPP
ELREMASRGGGMGRPRRWGTGPGGRDGGRGGRIDSGYGGRDGGRGSWGISSSSSRGGGRG
DDHESRDRSRYHDGHDRGRSPSRSPGKGSGWGDRSKNWNCDRSRSRSPPFARGRSPPRSF
HQAMMERGRTSPPPHQRVPPYNSDRPRERKSPFHERSPRGANGQAHYGEEEEEGMIHPE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcgactgcttctagtgtaagatatgcacctgaggaccccagtctcccc
aaaccatggaaaggcctggttgatggtagaactgggtatctttacttttggaatccagag
acaaatgtaacccagtatgagaggcctacaaacttggctcctccaccgacatcttcctca
gtgcccataagctcttctgttcaagttcaacaatcttctgaaggacagcgtcgtggttgt
agtcctgaaaaggaagatgataggtatggtcgagggaccaatggcgtatcaaagcttgat
gttggctcaaggggcaatcagaattcaagaggagcacctgttcaatcacataatgtcccg
aatggaacagcaagtgtgggacatggaggatcatctatgagaggttgtggatcgtcaact
gctgcagtcagtttgtctcctgatgcttatcgccggcgacatgaaataactgtgtctggt
gatgatgtgcccccgccttttatgtcatttgaagctactggttttccttctgagattctt
agagaggtacacaatgctggattctctgcaccaactccaattcaggcacagtcgtggcca
attgctttgcaaaatagggacatagtcgccattgcaaaaacgggatctggaaaaacattg
ggttatctagttccaggttttattcatctgaagcgccgccataataatcctctattgggt
cctactgttttggtattgtcaccaacgagggagttggcaactcagatacaagatgaagct
gggaagtttgggaagtcatcgagaattgcttgcacatgtttgtatggaggagcacccaag
ggtcctcagttgaaagatatagacagaggagtagatattgtggttgccactcccggtcgc
ttgaatgatattcttgagatgaggagaatcagcctcaatcaagtttcttaccttgtgctt
gatgaggctgatcgcatgttagacatgggctttgaacctcagataagaaagattgtgaag
gaagtgcctgtccgtcggcaaaccctcatgtatactgcaacatggccaaaggaagttcgg
aaaattgctgcagatctattggtgaatccggttcaggtcaatattggcaatgttgatgag
cttgcagccaacaaggccatcacgcagtatatagaagtattggcacccatggaaaaacac
agaagattggagcacatactgcgttctcaagaaccaggatcgaagataattatattttgt
tcaaccaaaaagatgtgtgatcaacttgctcgaaatcttacacgccaatttggagctgct
gctattcatggagacaaatctcagagtgagagggattatgtgttgaatcagtttcgtact
gggaggtctccagtgcttgtagccactgatgttgctgctcgaggattggacattaaagac
atcagggtggttgtcaactatgacttccctaccggagttgaggattatgttcatagaatt
ggtaggactggcagggctggtgctactggactggcttatacattttttggtgaccaggat
gcaaagtatgcttcagatcttattaaacttttagaaggagcaaaccaacgagtacctcct
gaacttcgtgaaatggcttcacgtggtggtggtatgggcaggcctagacgttggggtact
ggtcctggtggtcgtgatgggggtcgtggtggacgcattgactcaggttatgggggaagg
gatggtgggaggggtagttggggtatttctagttcctcttctagaggtggaggccgtgga
gatgatcatgagtcacgtgacaggagccgctaccatgacgggcatgataggggtcgtagt
cccagtcgaagccctggcaaagggtctggctggggtgatcgtagtaaaaactggaattgt
gaccgtagccgcagtaggagcccaccctttgcacgcggacgctccccaccacgtagcttt
caccaggcaatgatggaacggggtcggacatctccaccccctcaccaacgtgtaccacct
tacaacagtgacagaccaagggaacgcaagagtccatttcatgaaagatcaccaaggggt
gcaaatggtcaagcccattatggggaagaagaagaggaagggatgatacacccagaatga
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